Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0754
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0337 - 24503417-24503523,24503612-24503715,24503828-245039...    44   2e-04
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395...    42   5e-04
09_02_0119 - 4481522-4481580,4481615-4481718,4483132-4483231,448...    42   6e-04
07_01_0065 + 466416-467465                                             28   6.4  
02_02_0410 - 9926476-9927288                                           28   8.4  

>04_04_0337 -
           24503417-24503523,24503612-24503715,24503828-24503927,
           24504009-24504106,24504403-24504455,24504508-24504588,
           24504668-24504739,24504882-24504953,24505045-24505137,
           24505240-24505307,24505388-24505658
          Length = 372

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
 Frame = +1

Query: 250 FRSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETK 423
           F +NNS +SR  Y  +F+   ++   E +   S A A YL+S+ F  +K VY +      
Sbjct: 119 FVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSIDFPKDKKVYVIGEDGIL 178

Query: 424 RVLEAHGFKCKEGPDLG 474
           + LE  GF+   GP  G
Sbjct: 179 KELELAGFQYLGGPSDG 195



 Score = 36.7 bits (81), Expect = 0.018
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
 Frame = +2

Query: 113 VEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFV 256
           +E+    +DS +  + DCDGVIW  D L   V E    ++ +GK + FV
Sbjct: 72  LENADALIDSVETFIFDCDGVIWKGDKLIDGVPETLDMLRSKGKRLVFV 120


>12_02_0065 -
           13109652-13110746,13110843-13111762,13139462-13139528,
           13139607-13139675,13139877-13140020,13140100-13140171,
           13140316-13140387,13140466-13140558,13140655-13140726,
           13140809-13140925
          Length = 906

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
 Frame = +1

Query: 166 RWCYMDSRFFAASRRVL*TDEETREDSK---FRSNNSLRSRANYEAQFKAASIDNGFESL 336
           R C ++ R   A RR        R   K   F +NNS +SR  Y  +F+   ++   E +
Sbjct: 40  RRCDLEGR--EADRRSARDARHARSKGKRLVFVTNNSTKSRKQYGKKFETLGLNVNEEEI 97

Query: 337 IIPSIAVAEYLKSVTF--NKTVYCVTCTETKRVLEAHGFKCKEGPDLG 474
              S A   YL+S+ F  +K VY +      + LE  GF+   GP  G
Sbjct: 98  FASSFAYVAYLQSIDFPKDKKVYVIGEDGILKELELAGFQYLGGPSDG 145


>09_02_0119 -
           4481522-4481580,4481615-4481718,4483132-4483231,
           4483307-4483404,4483688-4483828,4485736-4485788,
           4486578-4486649,4487730-4487801,4487895-4487987,
           4489040-4489107,4489268-4489358
          Length = 316

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 250 FRSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTFN--KTVYCVTCTETK 423
           F +NNS +SR  Y  +F+A  ++   E +   S A A +LK   F+  K VY V      
Sbjct: 59  FVTNNSRKSRRQYAKKFRALGLEVTEEEIFTSSFAAAMFLKLNNFSPEKKVYVVGEDGIL 118

Query: 424 RVLEAHGFKCKEGP 465
             L   GF+C  GP
Sbjct: 119 EELRLAGFECLGGP 132



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 107 LSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFV 256
           L+ +     +DS D  L DCDGVIW  D L   V E    ++K GK + FV
Sbjct: 10  LTADAARSLVDSVDAFLFDCDGVIWKGDQLIEGVPETLDLLRKMGKKLVFV 60


>07_01_0065 + 466416-467465
          Length = 349

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 92  KHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQD 190
           K L  +S ED+ +FLD FD++ +D  G +   D
Sbjct: 302 KELGKISQEDISEFLDEFDNLDADHSGTLSPAD 334


>02_02_0410 - 9926476-9927288
          Length = 270

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 47  QKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFD 148
           ++K LKV+SI G        L++E  HK  +SFD
Sbjct: 185 EEKQLKVVSIFGTGGLGKTTLAMEVYHKIDESFD 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,523,035
Number of Sequences: 37544
Number of extensions: 322662
Number of successful extensions: 817
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)