Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0754
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    25   0.53 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    25   0.53 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    25   0.53 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    25   0.93 
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   6.6  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   8.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   8.7  

>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 203 VGEFFKQMKKRGKTVNFVPITAFDPEQIMKLNSKQP 310
           V  + K++      V FVPI+ +  + +++++SK P
Sbjct: 101 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 136


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 203 VGEFFKQMKKRGKTVNFVPITAFDPEQIMKLNSKQP 310
           V  + K++      V FVPI+ +  + +++++SK P
Sbjct: 117 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 152


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 25.4 bits (53), Expect = 0.53
 Identities = 10/36 (27%), Positives = 21/36 (58%)
 Frame = +2

Query: 203 VGEFFKQMKKRGKTVNFVPITAFDPEQIMKLNSKQP 310
           V  + K++      V FVPI+ +  + +++++SK P
Sbjct: 174 VSSYIKKIGYNPAAVAFVPISGWHGDNMLEVSSKMP 209


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 393 CLLCNLY*DQKSLRSSRIQMQGR 461
           CLLC    DQK+L  S ++  G+
Sbjct: 64  CLLCQKAFDQKNLYQSHLRSHGK 86


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 42  VYKKKVSKC*A*WVLNLNI 98
           VY+ +V KC   W+L+  I
Sbjct: 123 VYRMQVDKCGRLWILDTGI 141


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 423 KSLRSSRIQMQGRSRSRAGVLWRIHP 500
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 423 KSLRSSRIQMQGRSRSRAGVLWRIHP 500
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 16/44 (36%), Positives = 19/44 (43%)
 Frame = -1

Query: 285 ICSGSKAVIGTKFTVFPRFFICLKNSPTRGKES*VHITPSQSER 154
           I +G  AVI       P F I LKN   R  E  V    +Q E+
Sbjct: 761 IGAGLSAVIFISVQAPPHFEIKLKNQTARRGEPAVLQCEAQGEK 804


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 423 KSLRSSRIQMQGRSRSRAGVLWRIHP 500
           K   S +  M+ R R +A   W IHP
Sbjct: 58  KLFGSKKALMKERIRQKAAGHWVIHP 83


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 560 VYLKVAVKNDGSYLFIVSKY 501
           VY  + VKND ++  I  KY
Sbjct: 100 VYAFIVVKNDDNFRNISEKY 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,238
Number of Sequences: 438
Number of extensions: 3432
Number of successful extensions: 24
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)