Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0754
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative ...    46   2e-05
At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative ...    46   2e-05
At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative ...    38   0.007
At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E)            31   0.75 
At5g51290.1 68418.m06358 ceramide kinase-related contains weak s...    30   1.7  
At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C) ribo...    29   4.0  
At1g33850.1 68414.m04194 40S ribosomal protein S15, putative sim...    29   4.0  
At1g03080.1 68414.m00282 kinase interacting family protein simil...    29   4.0  
At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein co...    28   5.3  
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    27   9.3  
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated...    27   9.3  
At4g32630.1 68417.m04645 hypothetical protein                          27   9.3  

>At5g36790.1 68418.m04408 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +1

Query: 250 FRSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETK 423
           F +NNS +SR  Y  +F+   ++   E +   S A A YL+S+ F  +K VY +      
Sbjct: 116 FVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGIL 175

Query: 424 RVLEAHGFKCKEGPDLG 474
           + LE  GF+   GPD G
Sbjct: 176 KELELAGFQYLGGPDDG 192



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 44  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFK 220
           I  K L++ S   I  + +    +E+  + +DS +  + DCDGVIW  D L   V E   
Sbjct: 47  INHKPLRMTS-SNITPRAMATQQLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLD 105

Query: 221 QMKKRGKTVNFV 256
            ++ +GK + FV
Sbjct: 106 MLRAKGKRLVFV 117


>At5g36700.1 68418.m04392 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 362

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +1

Query: 250 FRSNNSLRSRANYEAQFKAASIDNGFESLIIPSIAVAEYLKSVTF--NKTVYCVTCTETK 423
           F +NNS +SR  Y  +F+   ++   E +   S A A YL+S+ F  +K VY +      
Sbjct: 116 FVTNNSTKSRKQYGKKFETLGLNVNEEEIFASSFAAAAYLQSINFPKDKKVYVIGEEGIL 175

Query: 424 RVLEAHGFKCKEGPDLG 474
           + LE  GF+   GPD G
Sbjct: 176 KELELAGFQYLGGPDDG 192



 Score = 39.1 bits (87), Expect = 0.003
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 44  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFK 220
           I  K L++ S   I  + +    +E+  + +DS +  + DCDGVIW  D L   V E   
Sbjct: 47  INHKPLRMTS-SNITPRAMATQQLENADQLIDSVETFIFDCDGVIWKGDKLIEGVPETLD 105

Query: 221 QMKKRGKTVNFV 256
            ++ +GK + FV
Sbjct: 106 MLRAKGKRLVFV 117


>At5g47760.1 68418.m05900 phosphoglycolate phosphatase, putative
           similar to phosphoglycolate phosphatase precursor
           [Chlamydomonas reinhardtii] GI:15982558; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 301

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 107 LSVEDLHKFLDSFDHVLSDCDGVIWTQDSL-PRVGEFFKQMKKRGKTVNFV 256
           LS  +     DS D  L DCDGVIW  ++L   V +    ++ +GK V FV
Sbjct: 6   LSSSNFKSLFDSVDTFLFDCDGVIWKGETLIDGVSQTLDLIRSKGKNVVFV 56


>At5g43640.1 68418.m05334 40S ribosomal protein S15 (RPS15E) 
          Length = 149

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 44  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDS 142
           ++K++ K  S  G++   LLD+S+EDL K   S
Sbjct: 11  VKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSS 43


>At5g51290.1 68418.m06358 ceramide kinase-related contains weak
           similarity to ceramide kinases (GI:21624342) [Mus
           musculus]
          Length = 608

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 133 SRFLRPCPLRLRWCYMDSRFFAASRRVL*TDEETRED 243
           S  L PCP + RWC    RF +    V+    E   D
Sbjct: 477 STTLNPCPEKTRWCRTKGRFLSIGAAVMSNRNERAPD 513


>At5g09500.1 68418.m01099 40S ribosomal protein S15 (RPS15C)
           ribosomal protein S15 - Arabidopsis thaliana,
           EMBL:Z23161
          Length = 150

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 44  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDS 142
           ++K++ K  S  G++   LLD+S +DL K   S
Sbjct: 12  VKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPS 44


>At1g33850.1 68414.m04194 40S ribosomal protein S15, putative
           similar to SP|Q08112 40S ribosomal protein S15
           {Arabidopsis thaliana}
          Length = 70

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 44  IQKKSLKVLSIMGIESKHLLDLSVEDLHKFLDS 142
           ++K+  K  S  G++   LLD+S EDL K   S
Sbjct: 11  VKKRIFKKFSFRGVDLDALLDMSTEDLVKHFSS 43


>At1g03080.1 68414.m00282 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1744

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = -2

Query: 635 PISRPIYEEDLRSFQVGYGSVHFRQVYLKVAVKND 531
           PI  P+Y +DLR    G  S H   V   +A   D
Sbjct: 134 PIRAPVYPDDLRKGAFGISSSHLSTVKRNIAFMED 168


>At2g39280.1 68415.m04823 RabGAP/TBC domain-containing protein
           contains Pfam profile PF00566: TBC domain
          Length = 771

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 210 SPTRGKES*VHITPSQSERTWSKESRNLCKSSTLKSNK 97
           SPT G     H+ PS+S++   KE     +   L ++K
Sbjct: 59  SPTNGSSENTHVNPSESDKKKEKELNKGAERKDLNADK 96


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 620 WGD**DGAHENWSFGFRDGSFYRSGYG 700
           WG   DG   NW +G   GS + SG G
Sbjct: 68  WGWSSDGTDTNWGWGSSSGSNHSSGTG 94


>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
           protein, Candida albicans, PIR2:S58135
          Length = 343

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 620 WGD**DGAHENWSFGFRDGSFYRSGYG 700
           WG   DG   NW +G   GS + SG G
Sbjct: 72  WGWSSDGTDTNWGWGSSSGSNHSSGTG 98


>At4g32630.1 68417.m04645 hypothetical protein 
          Length = 531

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 144 KESRNLCKSSTLKSNKCLDSIPIMLNTLRL 55
           K+SR   KS  L SNK + S PI+ +T  L
Sbjct: 212 KDSRGSSKSLDLSSNKDMPSFPIVRHTSEL 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,813,395
Number of Sequences: 28952
Number of extensions: 277170
Number of successful extensions: 838
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)