Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0753
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    29   1.0  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    29   1.0  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.3  
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c...    27   4.1  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    27   4.1  
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    26   5.4  
SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    26   5.4  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   7.2  
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom...    26   7.2  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.5  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   9.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.5  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
 Frame = -3

Query: 785 FP-LLRILFGTKVCLSETSSNFSFKILFEIPL*FVVSIRKIFLLLDTTIV-FSGSPMAYF 612
           FP  L    G+++ L      F F +LF +   F  S   +F L    IV FS  P+ +F
Sbjct: 98  FPNFLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSF--LFFLSQIFIVYFSSFPILHF 155

Query: 611 VNLFSMFFACLFGSFLF 561
           +  F     C+F SFLF
Sbjct: 156 L-FFFFLCVCVFLSFLF 171


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 23/77 (29%), Positives = 37/77 (48%)
 Frame = +1

Query: 556 PTKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKILNEKLDE 735
           P KR +    +  + N L K A  +P    VV+  KKILR++ T H+G  +  +   L  
Sbjct: 53  PLKRPIAEYVSSGVIN-LDKPA--NPSSHEVVAWVKKILRVEKTGHSGTLDPKVTGCLII 109

Query: 736 VSDKQTLVPNRILRSGK 786
            +D+ T +      +GK
Sbjct: 110 CNDRATRLVKSQQSAGK 126


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 649 QPSSSLGLLWHISLTYFQCSSLACLEV 569
           QP+S   L W I  TY + S+ +CL++
Sbjct: 605 QPTSVFDLCWTIKPTYEKSSNFSCLQL 631


>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 449

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 356 RSQKQLMDEISNGHEPAIKIEYVNEAEKDSSE-PELTRDSVYEEVE 490
           R QK+ +DE  NG    I     N  +KD+ E P +  +S YEE E
Sbjct: 60  REQKEELDEEENGKPSQISAFISNGHQKDTLENPAI--ESSYEESE 103


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/66 (28%), Positives = 33/66 (50%)
 Frame = +1

Query: 559 TKRKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKILNEKLDEV 738
           T +K  N  AKN+ +  +   +   ++   +  S  ILR D TN+N +S+ I  + L E+
Sbjct: 15  TFQKNLNSVAKNVSDA-SNILLSMDKRLSGLEASAGILRDDVTNYNRVSSNIY-DTLKEM 72

Query: 739 SDKQTL 756
              Q +
Sbjct: 73  ESLQVI 78


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 18/71 (25%), Positives = 39/71 (54%)
 Frame = +3

Query: 513 QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDDGCIEKQKNLTYRYYKS 692
           + KRE R+K++  + +K+KTS  ++ +  K + +I  ++ +E     +K K  + +  KS
Sbjct: 162 EAKREKRKKHSSKKKSKKKTSTGSALDP-KKLEKITKKKKKEHK---KKDKESSSKKRKS 217

Query: 693 QWDFKQNLKRE 725
               K+  K++
Sbjct: 218 GSSDKEEKKKK 228


>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 751 SVYLKLHPISRLRFCL 704
           S Y+K HP+ ++RFC+
Sbjct: 293 SQYIKKHPLHKVRFCM 308


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 606 VNEICHRRPREDDGCIEKQKNLTY 677
           +N I + +   +D CI+K++NL Y
Sbjct: 617 INGIRYGKSHNEDTCIKKRRNLNY 640


>SPBC887.09c |||leucine-rich repeat protein Sog2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 565 RKLPNRQAKNIENRLTKYAIGDPEKTMVVSRSKKILRIDTTNHNGISNKILNE 723
           R+LP  Q + I+ R+ + A+G      + S   +IL+     +  I + +L E
Sbjct: 40  RELPYEQLERIQGRIARLALG---HNFIKSIGPEILKFTRLRYLNIRSNVLRE 89


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -2

Query: 192 INILNNHIPNSICI 151
           +N+ N ++PNS+CI
Sbjct: 367 LNVANKYLPNSVCI 380


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = -1

Query: 724 SRLRFCLKSHCDL*YLYVRFFCFSIQPSSSLGLLWHISLTY--FQCSSL 584
           S+  FC+K+  +    Y+  +     P   + L W IS  Y  F CSSL
Sbjct: 7   SKKSFCIKAPSNWEKSYLEVWPLVTVPRQCICLRWCISKEYHEFTCSSL 55


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 653  DTTIVFSGSPMAYFVNLFSM 594
            D T+V S +P  +FVN+ SM
Sbjct: 2689 DGTVVSSHNPFVFFVNVLSM 2708


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,447,190
Number of Sequences: 5004
Number of extensions: 75449
Number of successful extensions: 238
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)