Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0753
         (802 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.82 
SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_26441| Best HMM Match : TNFR_c6 (HMM E-Value=3.8)                   29   4.4  
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  

>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 177

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 528 SRQKNNDHRSNKEKTSKQASEEH*K*VNEIC-HRRPREDDGCIEKQKNLTYRYYKSQ 695
           SR K + H S++ KTS+     H    +E   H R R +    E+ ++ T R+ KS+
Sbjct: 77  SRHKTSRHESSRHKTSRHGRSRHKTSRHETSRHERSRHETRQHERSRHKTSRHEKSR 133


>SB_19464| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 522 RESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 644
           RE R++    R ++E+  K+  ++  +   E   RRPREDD
Sbjct: 827 REDRERERREREDRERREKEEFDKRDRERREKDDRRPREDD 867


>SB_35073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 332

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
 Frame = -3

Query: 734 SSNFSFKILFEIPL*FVVSIRKIFLLLDTTIVFSGSPMA--YFVNLFSMFFACLFGSFLF 561
           + ++ + ILF +PL FV+   K          ++  P+A  Y V  F +F A   G  L 
Sbjct: 146 AGSWIYAILFNLPLFFVIGYEKHGDDFRCPEKWTNKPLAELYTVGAFFIFGAIPIGIMLI 205

Query: 560 VGPVVI 543
           V P++I
Sbjct: 206 VYPMII 211


>SB_26441| Best HMM Match : TNFR_c6 (HMM E-Value=3.8)
          Length = 281

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 487 GILRCSCYVKPKEKVDRKIMTTGPTKRKLPNRQAKNIENRLTKYAIGDPEK 639
           G+L CS       K+    +     K+K P RQ+ N  N L K+     EK
Sbjct: 13  GLLDCSSMSMGMRKMLEPTLDLRRFKQKKPLRQSNNFNNNLDKFIASTKEK 63


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 686 VVSIRKIFLLLDTTIVFSGSPMAY-FVNLFSMFFACLFGSFLFVGPVVIIF 537
           +V +  +FLL+DT ++ S     +  V+   + FA LF  FL V  V+I+F
Sbjct: 824 IVRVSLLFLLVDTVLILSAFFFLFLLVDTVFISFAFLF-LFLLVDTVLILF 873


>SB_24438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +3

Query: 528 SRQKNNDHRSNKEKTSKQASEEH*K*VNEIC-HRRPREDDGCIEKQKNLTYRYYKSQ 695
           SR K + H S++ KTS+     H    +E   H R R +    E+ ++ T R+  S+
Sbjct: 37  SRHKTSRHESSRHKTSRHERSRHKTSRHETSRHERSRHETRQHERSRHKTSRHETSR 93


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,348,039
Number of Sequences: 59808
Number of extensions: 501684
Number of successful extensions: 1679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1679
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2215746665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)