Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0753
         (802 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical pr...    33   0.24 
DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low ...    33   0.24 
Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical pr...    31   1.3  
AF003384-8|AAB54242.1|  163|Caenorhabditis elegans Hypothetical ...    31   1.3  
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    30   2.2  
U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan pr...    29   5.1  
AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    29   5.1  
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    28   6.8  
Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AF024503-4|AAG24097.1|  330|Caenorhabditis elegans Serpentine re...    28   8.9  

>Z75527-4|CAA99779.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.4 protein.
          Length = 316

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = +2

Query: 221 RGLRRNVNQMLPFSWIQLDSEDYNQICDPCIKRL-RESCSFRNLVIRSQKQLMDEISNGH 397
           +   R +N  L     ++ SE+++   +P +KRL + +     L       L DE+S+  
Sbjct: 193 KAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLAQENEKLTPHELSVLKDELSHFE 252

Query: 398 EPAIKIEY----VNEAEKDSSEPELTRDSVYEEVEFLDVPVMSNQKRK*TEK 541
               KIE+    V+  ++D+ E    +  VYE +E        N+K +  EK
Sbjct: 253 SQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRKARKLEK 304


>DQ178236-1|ABA18178.1|  316|Caenorhabditis elegans putative low
           density lipoproteinreceptor associated protein (37.4 kD)
           protein.
          Length = 316

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)
 Frame = +2

Query: 221 RGLRRNVNQMLPFSWIQLDSEDYNQICDPCIKRL-RESCSFRNLVIRSQKQLMDEISNGH 397
           +   R +N  L     ++ SE+++   +P +KRL + +     L       L DE+S+  
Sbjct: 193 KAANRELNDHLDEVHRKVTSEEFSPFNEPRVKRLWKLAQENEKLTPHELSVLKDELSHFE 252

Query: 398 EPAIKIEY----VNEAEKDSSEPELTRDSVYEEVEFLDVPVMSNQKRK*TEK 541
               KIE+    V+  ++D+ E    +  VYE +E        N+K +  EK
Sbjct: 253 SQLKKIEFHKEEVSRLQEDAEERGKDKSQVYENLELSIKHEKLNRKARKLEK 304


>Z81047-2|CAB02828.1|  376|Caenorhabditis elegans Hypothetical
           protein C41G6.3 protein.
          Length = 376

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = -3

Query: 770 ILFGT-KVCLSETSSNFSFKILFEIPL*FVVSIRKIFLLLDTTIVFSGSPMAYF--VNLF 600
           ILF T    LSE  S F+  +++ I       I++ +L  +  ++ S  P+A     N F
Sbjct: 279 ILFMTITFMLSEGLSGFNALLMYNI-----TKIQRKYLEFENAVLTSEFPIAVLKTFNAF 333

Query: 599 SMFFACLFGSFLFVGPVVIIFLS 531
           S FF C F S  +   V  +F+S
Sbjct: 334 SHFFVCFFLSSQYRDVVKSLFIS 356


>AF003384-8|AAB54242.1|  163|Caenorhabditis elegans Hypothetical
           protein K07B1.6a protein.
          Length = 163

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 20/58 (34%), Positives = 30/58 (51%)
 Frame = +3

Query: 414 LSM*MKQRKTHQNQNSRGIVCMKKWNS*MFLLCQTKRESRQKNNDHRSNKEKTSKQAS 587
           LS+ MK+R+   NQ  R + C     S +  LC+   ESR++   HR   +K S+  S
Sbjct: 30  LSLAMKKRRALYNQKERNMRCEVLQTSFITSLCKHMGESRKR---HRRGGKKRSRSNS 84


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 513 QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 644
           + K+E +++  D +  KEKT     +E  K   E     P++DD
Sbjct: 139 EKKKEKKEEKKDEKEKKEKTEDDKEKEKEKTKEEKVKEDPKKDD 182


>U51995-8|AAA96076.1|  331|Caenorhabditis elegans Dystroglycan
           protein 3 protein.
          Length = 331

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 138 FSLQFPFFYIIKLQFALCEQLLINPDIKKENQLLKKML 25
           FS+ F FF  +K  +AL    L++P   K +++L KM+
Sbjct: 277 FSIYFLFFGEMKSLYALMHDFLVSPYSLKLSKMLAKMI 314


>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +2

Query: 302 DPCIKRLRESCSFRNLVIRSQKQLMDEISNGHEPAIKIEY-VNEAEKDSSEPELTR 466
           D CI R+  +C   + ++ +  Q MD+I N +  + K  +  N+  +  S   ++R
Sbjct: 471 DDCIARMNSTCVLASELLPTHHQYMDKIINEYMKSAKQRFQQNQRTQSDSRKRISR 526


>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
            protein Y111B2A.14 protein.
          Length = 1481

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 10/44 (22%), Positives = 23/44 (52%)
 Frame = +3

Query: 513  QTKRESRQKNNDHRSNKEKTSKQASEEH*K*VNEICHRRPREDD 644
            + + +  Q+  + +  KE+  ++  E   + + EI  R+ RE+D
Sbjct: 995  EERMKKEQEKQEEKERKEREKREEKERKEREIREIMERKKREED 1038


>Z68337-2|CAA92746.2|  516|Caenorhabditis elegans Hypothetical
           protein M7.2 protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 350 VIRSQKQLMDEISNGHEPAIKIEYVNEAEKDSSEPELTRDSV 475
           V+++ +Q +  + + HE A +I   N    DSSEP L  + +
Sbjct: 12  VLKTVQQTLFALRDEHEAATRILEANLINSDSSEPSLPSEKM 53


>AF024503-4|AAG24097.1|  330|Caenorhabditis elegans Serpentine
           receptor, class h protein245 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 153 ISRSTFSLQFPFFYIIKLQFALCEQLLINPDI 58
           ISR TF  Q  FF  I +QF     ++I+P I
Sbjct: 226 ISRKTFEAQQTFFKAITIQFVFFLLMMISPII 257


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,767,577
Number of Sequences: 27780
Number of extensions: 416031
Number of successful extensions: 1511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1510
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)