Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0752
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|ch...    30   0.33 
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe...    29   1.00 
SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr 1|...    27   2.3  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   3.0  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   3.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    27   4.0  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   4.0  
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom...    26   7.0  

>SPCC576.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = -3

Query: 463 QQLSYLGSLLRVVCCCISCSRA 398
           ++L Y+GSL+  VC CISC+ A
Sbjct: 146 RKLVYIGSLIIYVCFCISCALA 167


>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 442 CPNTITVGWPGQTRQTLPGLNPXVH 516
           C ++  + WPG +RQ L  L+P +H
Sbjct: 294 CFSSTPIPWPGFSRQALKNLSPMLH 318


>SPAC637.09 |||ribonuclease H70 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 623

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -2

Query: 398 PRLCLGAVAHVHVLRLAQSSAALHERANLWSESGQLWGRLRRPSQSSLWAA 246
           P  C+G  AH  V   A     +    +L      +WGR R    +++W A
Sbjct: 460 PESCIGKAAHKSV-SCANDDEVVSAVVSLSDMHNFVWGRFRELEHAAMWNA 509


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +3

Query: 243 PRRPQTALRGSTKPSPQL---TTLTPKVRAFVERSAAL 347
           PR P T L+G+T+ SP++   +  TP    F +  A++
Sbjct: 112 PRSPLTPLKGNTRASPEIRYVSDFTPPSSPFEDMQASV 149


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 291 VGKASSTLAEQFVGGAAASNRHLSTLCRLPHVVFGDGLKMQH--VNCNTSK 145
           +GK    + + +V     SN+ + T+C    + F  GLKM    ++C + K
Sbjct: 547 MGKLEQRVIDAYVKCLNCSNKIIHTVCHNSLIYFSSGLKMSKSVISCLSRK 597


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -2

Query: 398 PRLCLGAVAHVHVLRLAQSSAALHERANLWSESGQ 294
           P L L AV++V    L  +  +LH+ A   SESG+
Sbjct: 709 PALSLEAVSNVSRTALEDAERSLHKSATTTSESGK 743


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 20  LNTIAYYRWLIFFFSFSNF 76
           L+ I Y+ W  FFFSF ++
Sbjct: 256 LSQINYFLWFFFFFSFPSY 274


>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 599 DYEKAVSDRFPGCMRGRTMYVIPFSMGPVGSPL 697
           D+EK  S R   C++G T YV      P+G+ L
Sbjct: 124 DFEKRCSVR---CLKGHTNYVSSIDFNPLGTLL 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,842
Number of Sequences: 5004
Number of extensions: 56739
Number of successful extensions: 191
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)