Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0752
         (786 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)                      100   1e-21
SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)                       69   6e-12
SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)                        64   1e-10
SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)                   31   0.80 
SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)                     31   1.1  
SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)                    31   1.4  
SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)                     31   1.4  
SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.4  
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)                   29   3.2  
SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)                     29   3.2  
SB_56907| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)            28   7.5  
SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)                     28   9.9  
SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)                  28   9.9  
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  

>SB_37397| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 613

 Score =  100 bits (240), Expect = 1e-21
 Identities = 46/86 (53%), Positives = 64/86 (74%), Gaps = 1/86 (1%)
 Frame = +2

Query: 512 FICSDRESDVVPSARAGQKSALGNYISPPD-YEKAVSDRFPGCMRGRTMYVIPFSMGPVG 688
           FIC+  + D VP  + G+   L  ++S  + ++K   +R+PGCM GRTMYV+PFSMGPVG
Sbjct: 84  FICTKCKDDAVPHFK-GKVGKLARWMSLEEAHKKLYEERYPGCMTGRTMYVLPFSMGPVG 142

Query: 689 SPLSKIGVEITDSPYVVFSMRVMTRL 766
           SP+SKIG+++TDS YVV  MR+MTR+
Sbjct: 143 SPISKIGIQLTDSEYVVCCMRIMTRM 168



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 31/69 (44%), Positives = 40/69 (57%)
 Frame = +3

Query: 303 LTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTDP 482
           L  KV+ FVE +A L  P  +H+CDGS+ E +A             L K++NC+   TDP
Sbjct: 14  LPKKVQEFVEENAKLMTPAQIHICDGSDAENKANIEVLLNKGAAVPLEKHENCYAVFTDP 73

Query: 483 ADVARVESR 509
            DVARVESR
Sbjct: 74  QDVARVESR 82


>SB_37396| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 549

 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 29/38 (76%), Positives = 35/38 (92%)
 Frame = +2

Query: 653 MYVIPFSMGPVGSPLSKIGVEITDSPYVVFSMRVMTRL 766
           MYV+PFSMGPVGSP+SKIG+E+TDS YVV  MR+MTR+
Sbjct: 1   MYVMPFSMGPVGSPISKIGIELTDSEYVVCCMRIMTRM 38


>SB_3810| Best HMM Match : PEPCK (HMM E-Value=0)
          Length = 707

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 29/70 (41%), Positives = 42/70 (60%)
 Frame = +3

Query: 300 TLTPKVRAFVERSAALCQPEHVHVCDGSETEARAXXXXXXXXXXXKRLPKYDNCWLARTD 479
           +L  KV+ FV  +  LCQP+ +H+CDGS  E ++            +L K +N ++ RTD
Sbjct: 154 SLPKKVQDFVTENVELCQPDKIHICDGSPEENQSLVDFLVKKGTCFKLTKRENSYVVRTD 213

Query: 480 PADVARVESR 509
           P DVARVES+
Sbjct: 214 PGDVARVESK 223



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 21/32 (65%), Positives = 29/32 (90%)
 Frame = +2

Query: 671 SMGPVGSPLSKIGVEITDSPYVVFSMRVMTRL 766
           +MGPVGSP++KIG+++TDS YVV  MR+MTR+
Sbjct: 321 NMGPVGSPIAKIGIQLTDSEYVVCCMRIMTRM 352



 Score = 41.5 bits (93), Expect = 7e-04
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 512 FICSDRESDVVPSARAGQKSA---LGNYISPPDYEKAVSDRFPGCMR 643
           FIC++ E D VP  + G+      LG ++S     +A+ +RFPGCM+
Sbjct: 225 FICTENERDAVPDFKKGKDGVVGQLGRWLSVEKANQALGERFPGCMK 271


>SB_16007| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 326

 Score = 33.5 bits (73), Expect = 0.20
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 451 YLGSLLRVVCCCISCSRALASVSEPSHTCTCSGWHRAALRS-TNARTFGVRVVS 293
           ++G  ++  CCCI C+ A+    +   T TCS      L+S  NA+  G  ++S
Sbjct: 204 FIGIDIKKSCCCILCNSAVDINGDEEETITCSKCKITTLKSLLNAKLVGNLLIS 257


>SB_42356| Best HMM Match : PDZ (HMM E-Value=5.7e-19)
          Length = 619

 Score = 31.5 bits (68), Expect = 0.80
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
 Frame = +1

Query: 526 SGE-RRGPLGSRRPEVRPGELHLPPG-----LREGRVRQIPWLHERSHNVRDT 666
           SGE RRG   + + E+R  +   P G     L  GRV ++PW  ++SH+  DT
Sbjct: 182 SGEPRRGYDSTSQAEIRRSQ-ESPQGGGQESLSRGRVPEVPWYEDQSHHSSDT 233


>SB_13774| Best HMM Match : Cgr1 (HMM E-Value=0.74)
          Length = 668

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 598 RGGDVVPQGGLLAGASRGDHVALPIG 521
           R GDV+P GG    + RGD V + IG
Sbjct: 526 RSGDVIPLGGTAGDSERGDEVPVLIG 551


>SB_36508| Best HMM Match : WD40 (HMM E-Value=0.006)
          Length = 1103

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 607 EGRVRQIPWLHERSHNVRDTVLDGPCGISSLEDWCRNHGFALRGFFY 747
           E ++R++     R   + DTV  G  GI S E W     + +R F +
Sbjct: 304 EEKIRRVKHAKNRRKQISDTVYKGELGIGSYEPWQLEDFYFVRDFVW 350


>SB_49496| Best HMM Match : DUF81 (HMM E-Value=3.6)
          Length = 302

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 2/145 (1%)
 Frame = -3

Query: 622 VGHGLLVIRGGDVVPQGGLLAGASRGDHVALP-IGAYEXRDSTRATSAGSVRANQQLSYL 446
           VG  LL++ GG VV      A A    H ALP + ++    S      GS ++       
Sbjct: 159 VGVVLLIVNGGVVVGVECTGASAVHESHAALPALPSHRQHTSPGNWVQGSTQSPDHRESK 218

Query: 445 GSLLRVVCCCISCSRALASVSEPSHTCTCSGWHRAALRSTNARTFGVRV-VSCGEGFVDP 269
            +L    C C+S       +S PS T    G H+  L+  N+ T G+R+  S      D 
Sbjct: 219 LTLAGTYCVCLS----TVLLSYPSKTV---GRHQ-PLQGVNS-TGGLRIGRSSASSLTDS 269

Query: 268 RRAVCGRRGCIQSPLEHIVPSSSRS 194
            R+V   R  + +  + ++  S+ S
Sbjct: 270 LRSVVRLRRAVSAHSKAVIRLSTES 294


>SB_41395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 24/63 (38%), Positives = 32/63 (50%)
 Frame = +2

Query: 530 ESDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCMRGRTMYVIPFSMGPVGSPLSKIG 709
           ES   P  R  Q S L N    P + + +S+      R R M +I FS+GPVGS L  IG
Sbjct: 51  ESSNKPPIRLKQPSQLVNL---PTH-RGMSEGETKATRMRNM-LIEFSLGPVGSTLGAIG 105

Query: 710 VEI 718
            ++
Sbjct: 106 PQV 108


>SB_4587| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2656

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 286 EGFVDPRRAVCGRRGCIQSPLEHIVPSSS 200
           EG   P  A+C  R  + SPL H  P+S+
Sbjct: 332 EGSRSPDHALCSNRSPVSSPLAHTTPTST 360


>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
          Length = 1819

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +3

Query: 558  PARSPPWGTTSPPRITRRPCPTDSLVA--*EVAQC 656
            P R P WGTT+ P  T   C   S+V    E+++C
Sbjct: 977  PTREPKWGTTAYPTSTFINCSASSVVTFKWEISKC 1011


>SB_6561| Best HMM Match : HEAT (HMM E-Value=0.028)
          Length = 1444

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = -3

Query: 367  CTCSGWHRAALRSTNARTFGVRVVSCGEGF------VDPRRAVCGRRGCIQSPLEHIVPS 206
            CT SG H   LRS   R+ G  +   G  F      +DP R+VC + G +  PL  +   
Sbjct: 1123 CTKSGPHIDPLRSVYTRS-GPHIDPLGSVFTRSGPHIDPLRSVCTKSGPLIDPLRSVYTR 1181

Query: 205  S 203
            S
Sbjct: 1182 S 1182


>SB_56907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 541 HVALPIGAYEXRDSTRATSAGSVRANQQLSYLGSLLRVVC 422
           HVAL +G  + +++ ++   G VR N QLS    +  VVC
Sbjct: 47  HVALGLGFLDLKEALKSGRGGDVRKNPQLS--DKVFDVVC 84


>SB_42661| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = -3

Query: 634 TRESVGHGLLVIRGGDVVPQGGLLAGASRGDHV 536
           T    GHG + + GG V   GG  AG   G HV
Sbjct: 319 TMNMTGHGEVNVNGGSVTGSGGGGAGGRIGIHV 351


>SB_18954| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.0015)
          Length = 921

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 533 SDVVPSARAGQKSALGNYISPPDYEKAVSDRFPGCM-RGRTMYVIPFSMGPVGS 691
           S ++ +   G++  LGN++   D E+ +   + GC+  G +   +P ++ PV +
Sbjct: 435 SRILHALNGGEQRVLGNHVDGYDPERRIIYEYMGCIWHGCSNCYLPDTVNPVNN 488


>SB_39175| Best HMM Match : DUF1378 (HMM E-Value=8)
          Length = 282

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 499 LNPXVHMLRSGERRGPLGSRRP 564
           LNP ++ +RSGE RG L  R P
Sbjct: 105 LNPIIYCVRSGELRGALLKRLP 126


>SB_19658| Best HMM Match : zf-AD (HMM E-Value=0.0032)
          Length = 227

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -2

Query: 503 FNPGNVCRVCPGQPTVIVFGQ 441
           FNP N CRVC    +  V GQ
Sbjct: 37  FNPNNFCRVCNANTSKRVLGQ 57


>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 796

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/30 (40%), Positives = 13/30 (43%)
 Frame = +3

Query: 540 WSPRLAPARSPPWGTTSPPRITRRPCPTDS 629
           W PRL P   P     +P  I  R C T S
Sbjct: 146 WEPRLYPLAQPDLNYAAPEFILSRTCDTSS 175


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 512 FICSDRESDVVPSARAGQKSALGNYISPPDYEKAVSDRFP 631
           F  S+R SD+VP     Q  ++   I PP    + SD  P
Sbjct: 546 FCVSNRLSDIVPMGSPAQSPSVFRRIPPPPLPDSESDSSP 585


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,174,574
Number of Sequences: 59808
Number of extensions: 506170
Number of successful extensions: 1594
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)