Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0752
         (786 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g24316.1 68418.m02864 proline-rich family protein contains pr...    30   1.5  
At4g15545.1 68417.m02375 expressed protein                             30   2.0  
At4g34490.1 68417.m04903 cyclase-associated protein (cap1) ident...    29   3.5  

>At5g24316.1 68418.m02864 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 125

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 540 WSPRLAPARSPPWGTTSPPRITRRP 614
           WSPR  P R  P+    PP  TRRP
Sbjct: 95  WSPRPIPKRPMPYVPPPPPPPTRRP 119


>At4g15545.1 68417.m02375 expressed protein
          Length = 337

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +3

Query: 468 ARTDPADVARVESRXSYAPIGRATWSPRLAPARSPP-WGTTSPPRITRRP 614
           A TD  + A   S  +  P+   T +PRL P  SPP    +  P+ T RP
Sbjct: 184 AATDNENDAPKPSLSASLPLVSQTTTPRLTPPGSPPILSASGTPKTTSRP 233


>At4g34490.1 68417.m04903 cyclase-associated protein (cap1)
           identical to cyclase-associated protein (cap1)
           GI:3169136 from [Arabidopsis thaliana]
          Length = 476

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 498 VESRXSYAPIGRATWSPRLAPARSPPWGTTSPP 596
           V+S     P+  A+  P  APA+ PP     PP
Sbjct: 209 VKSHYPLGPVWNASGKPASAPAKGPPGAPAPPP 241


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,517,589
Number of Sequences: 28952
Number of extensions: 338279
Number of successful extensions: 1134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)