Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0750
(642 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 137 1e-33
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 110 1e-25
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 75 7e-15
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 73 5e-14
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 66 4e-12
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 62 7e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 60 2e-10
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 58 1e-09
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 58 1e-09
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 57 2e-09
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 49 5e-07
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 47 3e-06
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 46 4e-06
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 46 6e-06
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 45 1e-05
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 44 1e-05
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 43 4e-05
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 40 2e-04
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 38 0.002
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 33 0.026
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 31 0.19
SPBC27.02c |ask1|mug181|DASH complex subunit Ask1|Schizosaccharo... 29 0.43
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 29 0.57
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 29 0.75
SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar... 28 1.3
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 2.3
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 27 3.0
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P... 26 4.0
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 26 5.3
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 25 7.0
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 7.0
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 137 bits (331), Expect = 1e-33
Identities = 60/85 (70%), Positives = 78/85 (91%)
Frame = +2
Query: 257 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 436
++ ++T++D+V++TFDDMNLK ELLRGIYAYGFE+PSAIQQRAIMP + RDV+AQAQ
Sbjct: 5 LEDSVIETNYDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQ 64
Query: 437 SGTGKTATFSISILQQIDTSIRECK 511
SGTGKTATFSIS+LQ+IDTS+++C+
Sbjct: 65 SGTGKTATFSISVLQKIDTSLKQCQ 89
Score = 75.4 bits (177), Expect = 7e-15
Identities = 34/42 (80%), Positives = 39/42 (92%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
ALILAPTRELAQQIQKVV+ALGD +N +CHACIGGT VR+D+
Sbjct: 90 ALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRDDM 131
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 110 bits (265), Expect = 1e-25
Identities = 55/84 (65%), Positives = 66/84 (78%), Gaps = 1/84 (1%)
Frame = +2
Query: 257 MDPGTLDTDWD-QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQA 433
M+ L T D V +F++MNLKE+LLRGIYAYG+E PSA+Q RAI+ +GRDVIAQA
Sbjct: 6 MENVELTTSEDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQA 65
Query: 434 QSGTGKTATFSISILQQIDTSIRE 505
QSGTGKTATFSI ILQ ID S+R+
Sbjct: 66 QSGTGKTATFSIGILQSIDLSVRD 89
Score = 73.7 bits (173), Expect = 2e-14
Identities = 32/44 (72%), Positives = 39/44 (88%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
ALIL+PTRELA QIQ VV+ALGDH+N +CHACIGGT+V DI++
Sbjct: 92 ALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKK 135
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 75.4 bits (177), Expect = 7e-15
Identities = 38/79 (48%), Positives = 53/79 (67%)
Frame = +2
Query: 257 MDPGTLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQ 436
M P T D + E F+D LK ELL GI+ GFE+PS IQ+ +I + GRD++A+A+
Sbjct: 31 MRPKTEDVTKTRGTE-FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAK 89
Query: 437 SGTGKTATFSISILQQIDT 493
+GTGKTA F I L+++DT
Sbjct: 90 NGTGKTAAFVIPSLEKVDT 108
Score = 46.8 bits (106), Expect = 3e-06
Identities = 24/48 (50%), Positives = 29/48 (60%)
Frame = +1
Query: 493 KHS*M*ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
K S + LIL PTRELA Q +V LG H+N K GGT +R+DI
Sbjct: 109 KKSKIQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDI 156
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 72.5 bits (170), Expect = 5e-14
Identities = 32/70 (45%), Positives = 54/70 (77%), Gaps = 2/70 (2%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQG--RDVIAQAQSGTGKTATFSI 469
V++F+++ LK ELL+GIY+ F+KPS IQ++A+ + R++I Q+QSGTGKTA F++
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 470 SILQQIDTSI 499
++L ++D S+
Sbjct: 173 TMLSRVDASV 182
Score = 31.1 bits (67), Expect = 0.14
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAK 594
A+ LAP+RELA+QI VV +G + K
Sbjct: 187 AICLAPSRELARQIMDVVTEMGKYTEVK 214
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 66.1 bits (154), Expect = 4e-12
Identities = 35/62 (56%), Positives = 40/62 (64%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F D LK ELLR I GFE PS +QQ I I G DV+ QA+SG GKTA F +S LQQ
Sbjct: 53 FRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQ 112
Query: 485 ID 490
I+
Sbjct: 113 IE 114
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 62.1 bits (144), Expect = 7e-11
Identities = 27/61 (44%), Positives = 42/61 (68%)
Frame = +2
Query: 299 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
+TF D NL L R I+ FEKP+++Q I ++G+D++AQA++G+GKTA + I IL
Sbjct: 14 KTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPIL 73
Query: 479 Q 481
+
Sbjct: 74 E 74
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/38 (47%), Positives = 22/38 (57%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 624
AL+L PTRELAQQ+ V+ + L A C I NV
Sbjct: 91 ALLLVPTRELAQQVYNVL----EKLTAFCSKHIRFINV 124
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 60.5 bits (140), Expect = 2e-10
Identities = 25/65 (38%), Positives = 44/65 (67%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F M L + LLR I+ GF+ P+ IQ++ I ++GRDV+ A++G+GKTA F I +++
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 485 IDTSI 499
+ +++
Sbjct: 131 LKSTL 135
Score = 31.9 bits (69), Expect = 0.081
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 630
ALIL+P RELA Q KVV + + A +GG ++ E
Sbjct: 142 ALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEE 181
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 58.0 bits (134), Expect = 1e-09
Identities = 26/71 (36%), Positives = 45/71 (63%)
Frame = +2
Query: 275 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 454
D+ ++ +TF ++ + +EL GF+ P+ IQQ AI + RDVI AQ+G+GKT
Sbjct: 38 DSQNNEAPKTFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKT 97
Query: 455 ATFSISILQQI 487
A F++ ++Q++
Sbjct: 98 AAFALPVIQEL 108
Score = 33.9 bits (74), Expect = 0.020
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 624
A++LAPTRELA QI + A+G + + +GG ++
Sbjct: 117 AVVLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDM 154
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 57.6 bits (133), Expect = 1e-09
Identities = 25/64 (39%), Positives = 40/64 (62%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
+E F D+ L E + + I GFE + IQ+R+I P + GRDV+ A++G+GKT F I
Sbjct: 88 IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPT 147
Query: 476 LQQI 487
++ +
Sbjct: 148 IEML 151
Score = 27.1 bits (57), Expect = 2.3
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 633
+I++PTRELA QI V L + + IGG N R +
Sbjct: 165 IIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAE 204
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = +2
Query: 302 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 481
+F MNL +L+G+ GFE P+ IQ + I + G+D++ A +G+GKTA F + IL+
Sbjct: 260 SFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILE 319
Query: 482 QI 487
++
Sbjct: 320 RL 321
Score = 32.3 bits (70), Expect = 0.061
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 627
LIL PTRELA Q V + + CIGG +++
Sbjct: 334 LILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLK 371
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/69 (34%), Positives = 40/69 (57%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + V ++ L + + I + G+EKP++IQ +AI GRDVI A++G+GKT
Sbjct: 412 DCPKPVTSWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIA 471
Query: 461 FSISILQQI 487
F + + + I
Sbjct: 472 FLLPMFRHI 480
Score = 28.7 bits (61), Expect = 0.75
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
A+I+ PTRELA QI + LN + GG +++ I
Sbjct: 494 AIIMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQI 535
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 46.8 bits (106), Expect = 3e-06
Identities = 21/66 (31%), Positives = 41/66 (62%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + +++ L E+L+ + +++PS+IQ+ AI +Q +D+I A++G+GKTA
Sbjct: 243 DLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAA 302
Query: 461 FSISIL 478
F I ++
Sbjct: 303 FIIPLI 308
Score = 35.9 bits (79), Expect = 0.005
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
A++LAPTRELAQQIQ + L +C + +GG
Sbjct: 328 AVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGG 362
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 46.4 bits (105), Expect = 4e-06
Identities = 24/61 (39%), Positives = 35/61 (57%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
V F L LL+ I G+ +P+ +Q+ +I GRD++A AQ+G+GKTA F I
Sbjct: 168 VNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPI 227
Query: 476 L 478
L
Sbjct: 228 L 228
Score = 28.7 bits (61), Expect = 0.75
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
LILAPTREL QI + + A GG ++R IRQ
Sbjct: 259 LILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADIRAQIRQ 301
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 45.6 bits (103), Expect = 6e-06
Identities = 20/65 (30%), Positives = 38/65 (58%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
V TF++ +L+ + GFE P+ IQQ+A + GRD++ + +G+GKT ++ +
Sbjct: 121 VTTFEEAGFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPA 180
Query: 476 LQQID 490
+ I+
Sbjct: 181 IVHIN 185
Score = 29.1 bits (62), Expect = 0.57
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
L+LAPTRELA QIQ+ G + GG IR
Sbjct: 199 LVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIR 240
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/62 (30%), Positives = 39/62 (62%)
Frame = +2
Query: 299 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
++F D+ + L+ + A +P+ IQ+ I ++GR+ I A++G+GKTA F++ I+
Sbjct: 7 KSFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPII 66
Query: 479 QQ 484
++
Sbjct: 67 EK 68
Score = 39.1 bits (87), Expect = 5e-04
Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN-VREDI 636
ALIL PTRELA QI + ALG +LN K +GG + +R+ I
Sbjct: 78 ALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSI 120
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 44.4 bits (100), Expect = 1e-05
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
V + +L E+L + GF KP IQ I G D+I +A +G+GKT F I I
Sbjct: 121 VSAWAHFSLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPI 180
Query: 476 LQ 481
L+
Sbjct: 181 LE 182
Score = 28.3 bits (60), Expect = 1.00
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
AL++APTRELA QI + + N + + GG V++ R
Sbjct: 195 ALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQR 237
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 42.7 bits (96), Expect = 4e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
FD++++ +L G+ Y ++P+ IQ + GRDV+ A++G+GKT F I LQ
Sbjct: 169 FDELDVSAKLREGLKNY--KEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQY 226
Query: 485 ID 490
++
Sbjct: 227 LN 228
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
L+++PTRELA Q + + +L N K GG E R
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQAR 281
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/62 (25%), Positives = 36/62 (58%)
Frame = +2
Query: 302 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 481
+F +N+ + L + A GF+K + +Q AI ++ +D++ +A +G+GKT + +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 482 QI 487
++
Sbjct: 62 KV 63
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/17 (76%), Positives = 14/17 (82%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKV 561
ALI+APTRELA QI V
Sbjct: 75 ALIVAPTRELATQIFNV 91
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/66 (24%), Positives = 37/66 (56%)
Frame = +2
Query: 290 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 469
+ V+ F ++ L + + F + IQ++ I ++GRD++ A++G+GKT F +
Sbjct: 36 ETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIV 95
Query: 470 SILQQI 487
+++ +
Sbjct: 96 PLIENL 101
Score = 32.7 bits (71), Expect = 0.046
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 633
AL+++PTRELA Q + ++ +G + IGG N +E+
Sbjct: 114 ALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEE 154
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 33.5 bits (73), Expect = 0.026
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +2
Query: 356 GFEKPSAIQQRAIMPCIQGRD-VIAQAQSGTGKTATFSISILQQI 487
GFEK + +QQR + + + QA++GTGKT F + + +
Sbjct: 57 GFEKMTPVQQRVLNEVFPNEENAVVQAKTGTGKTLAFLLVAFKDV 101
Score = 25.0 bits (52), Expect = 9.3
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG-TNVRED 633
++IL+PTRELA QI + L + IGG + +RE+
Sbjct: 115 SVILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREE 156
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 30.7 bits (66), Expect = 0.19
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Frame = +2
Query: 326 EELLRGIYAYGFEKPSAIQ----QRAIMPCIQG-RDVIAQAQSGTGKTATFSISILQQID 490
EE GI +K + + QR +P I RD++A A +G+GKT + ILQ++
Sbjct: 50 EEFPEGILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQ 109
Query: 491 TSI 499
+
Sbjct: 110 LHV 112
Score = 25.4 bits (53), Expect = 7.0
Identities = 10/16 (62%), Positives = 14/16 (87%)
Frame = +1
Query: 511 ALILAPTRELAQQIQK 558
A+I+APTREL +QI +
Sbjct: 118 AIIVAPTRELCEQIYR 133
>SPBC27.02c |ask1|mug181|DASH complex subunit
Ask1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 307
Score = 29.5 bits (63), Expect = 0.43
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +2
Query: 272 LDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRD 418
LDT+W V + NL+ + + I + F PS I + MP + R+
Sbjct: 184 LDTNWQVQVTPREPKNLQSQEVMDIDSSPFVSPSPISMKMDMPSLNDRN 232
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 29.1 bits (62), Expect = 0.57
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 320 LKEELLRGIY-AYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI 487
L +EL+ +Y + EK Q AI G VI + +GK+ + I ILQ +
Sbjct: 295 LSQELINALYTSRNIEKTYKHQADAINHLWNGFHVIVSTSTSSGKSLIYQIPILQSL 351
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 28.7 bits (61), Expect = 0.75
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGD----HLNAKCHACIGGTNVRED 633
A+I+APTREL QQI V L + H C+ IGG + +
Sbjct: 219 AVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNV-IGGEKKKSE 262
Score = 28.3 bits (60), Expect = 1.00
Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Frame = +2
Query: 368 PSAIQQRAIMPCIQ--GRDVIAQAQSGTGKTATFSISILQQI 487
P+AIQ + + +D +AQ+G+GKT + + I+Q++
Sbjct: 162 PTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRL 203
>SPBC1198.06c |||mannan endo-1,6-alpha-mannosidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 466
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +2
Query: 269 TLDTDWDQVVETFDDMNLKEELLRGIYAYGF 361
T D WD E FDD N + +GI+ F
Sbjct: 281 TDDIAWDPQCEYFDDCNSDQTAFKGIFMQSF 311
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 183 RSEDWPEDSKNGPSKDQGSYDGPPEWTLGHLTPTG 287
R E + S + +KD+G ++G EW L H + G
Sbjct: 226 RKELRDQASASENNKDRGEFEGKDEWLLPHPSKKG 260
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 225 KDQGSYDGPPEWTLGHLTPTGIKLSKPSMT*TSKK 329
K++ SYD P E+ +G + PT K+ S + KK
Sbjct: 56 KNEESYDIPNEYLVGEIFPTNSKVIVESFSSPLKK 90
>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -1
Query: 585 QVITKSYHHLLNLLGQLSCGSQDQ 514
+++ KSYH+L N QLS ++DQ
Sbjct: 165 ELVDKSYHNLHNAWSQLSREAKDQ 188
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.8 bits (54), Expect = 5.3
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 550 IQKVVIALGDHLNAKCHACIGGTNVRED 633
++ + A+ DHL+ + CIG N+ ED
Sbjct: 134 VEMIRRAISDHLDLLNNCCIGIANLNED 161
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 25.4 bits (53), Expect = 7.0
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = -1
Query: 642 LANIFTDIGAT---NASMAFSIQVITKSYHHLLNLL 544
L NIFT + N+ FS+ +++++Y H NLL
Sbjct: 599 LQNIFTTLYTAWCHNSIAVFSLCLLSQNYEHAANLL 634
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +2
Query: 275 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGR 415
DTDWD +V + D++L+ RGI A G + + + P + +
Sbjct: 618 DTDWDALV-SLSDLDLQN---RGIMALGARRKLLKSFQEVAPLVSSK 660
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,085
Number of Sequences: 5004
Number of extensions: 55430
Number of successful extensions: 191
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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