Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0750
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       55   5e-10
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    24   1.4  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   1.9  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   4.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 55.2 bits (127), Expect = 5e-10
 Identities = 24/66 (36%), Positives = 44/66 (66%)
 Frame = +2

Query: 290 QVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 469
           Q +E+F+   L+  +L  I   G++KP+ +Q+ A+   + GRD++A AQ+G+GKTA F++
Sbjct: 193 QPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAV 252

Query: 470 SILQQI 487
            I+  +
Sbjct: 253 PIINTL 258



 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 624
           +I++PTREL  QI + ++    +   K     GGT+V
Sbjct: 277 VIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSV 313


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +3

Query: 435 SQELEKLLLSLYRFYNKSIQAFVNVS 512
           S++ E+L+  L+R YNK I+   N++
Sbjct: 24  SEDEERLVRDLFRGYNKLIRPVQNMT 49


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 625 GHWCHQCKHGI*HSS 581
           G  CH+CK+GI  SS
Sbjct: 40  GDSCHKCKYGIAMSS 54


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 5/107 (4%)
 Frame = +1

Query: 319 PQRRIVERHIRLWF*KTFC----NPATRNNALHPRTRCYRS-SPVRNWKNCYFLYIDSTT 483
           P +++    I  WF  TFC    N AT  NA+      ++    V N K   +  +D   
Sbjct: 521 PDKQLTLNEIYNWFQNTFCYFRRNAATWKNAVRHNLSLHKCFMRVENVKGAVWT-VDEVE 579

Query: 484 NRYKHS*M*ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 624
              +               +  +       GD LNA   A +G +N+
Sbjct: 580 FYKRRPQRACSTTGGVPSKSPTLTHSPTMYGDALNANLQAALGDSNM 626


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 603 LHWWHQCP 626
           LH WH CP
Sbjct: 470 LHHWHHCP 477


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 544 GPALLWEPGSKLTFTNA 494
           GP+ + EP S++ F+N+
Sbjct: 29  GPSFVMEPPSRVEFSNS 45


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 544 GPALLWEPGSKLTFTNA 494
           GP+ + EP S++ F+N+
Sbjct: 29  GPSFVMEPPSRVEFSNS 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,876
Number of Sequences: 438
Number of extensions: 3795
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)