Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0750
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 111 5e-25
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 110 7e-25
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 110 9e-25
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 110 9e-25
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 94 8e-20
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 76 2e-14
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 76 2e-14
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 73 2e-13
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 73 2e-13
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 73 2e-13
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 68 5e-12
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 68 5e-12
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 63 1e-10
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 60 1e-09
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 56 2e-08
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 56 3e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 55 3e-08
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 53 1e-07
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 53 2e-07
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 52 4e-07
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 52 4e-07
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 50 2e-06
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 50 2e-06
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 49 2e-06
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 49 2e-06
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 49 3e-06
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 49 3e-06
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 49 3e-06
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 49 3e-06
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 48 4e-06
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 48 5e-06
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 48 7e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 9e-06
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 47 1e-05
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 47 1e-05
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 46 3e-05
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 46 3e-05
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 46 3e-05
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 45 4e-05
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 45 4e-05
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 45 4e-05
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 43 2e-04
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 43 2e-04
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 42 3e-04
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 42 3e-04
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 42 3e-04
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 42 3e-04
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 42 3e-04
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 41 6e-04
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 40 0.001
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 40 0.001
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 40 0.001
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 40 0.001
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 40 0.001
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 38 0.004
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 38 0.004
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 36 0.023
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 35 0.053
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 33 0.21
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 32 0.37
At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger) fa... 29 2.6
At3g49970.1 68416.m05464 phototropic-responsive protein, putativ... 29 3.5
At1g03250.1 68414.m00303 expressed protein 29 3.5
At2g24020.1 68415.m02869 expressed protein contains Pfam domain ... 28 4.6
At1g76010.1 68414.m08825 expressed protein 28 4.6
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 27 8.0
At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP ... 27 8.0
At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP ... 27 8.0
At4g02480.1 68417.m00335 AAA-type ATPase family protein contains... 27 8.0
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 111 bits (266), Expect = 5e-25
Identities = 49/76 (64%), Positives = 64/76 (84%)
Frame = +2
Query: 278 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 457
TD + + +F+DM +KE++LRG+Y YGFEKPSAIQQRA+MP +QGRDVIAQAQSGTGKT+
Sbjct: 28 TDGIEPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTS 87
Query: 458 TFSISILQQIDTSIRE 505
++S+ Q +DTS RE
Sbjct: 88 MIALSVCQVVDTSSRE 103
Score = 60.1 bits (139), Expect = 1e-09
Identities = 27/44 (61%), Positives = 34/44 (77%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
ALIL+PTRELA Q +K + A+G H N + HACIGG +V EDIR+
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRK 149
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 110 bits (265), Expect = 7e-25
Identities = 51/81 (62%), Positives = 65/81 (80%)
Frame = +2
Query: 269 TLDTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTG 448
T T++D+V ++FD M L+ +LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTG
Sbjct: 31 TFYTNYDEVCDSFDAMELQPDLLRGIYAYGFEKPSAIQQRGIIPFCKGLDVIQQAQSGTG 90
Query: 449 KTATFSISILQQIDTSIRECK 511
KTATF +LQQ+D S+ +C+
Sbjct: 91 KTATFCSGVLQQLDISLVQCQ 111
Score = 68.1 bits (159), Expect = 5e-12
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
AL+LAPTRELAQQI+KV+ ALGD+L K AC+GGT+VRED R
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQR 154
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 110 bits (264), Expect = 9e-25
Identities = 52/78 (66%), Positives = 62/78 (79%)
Frame = +2
Query: 278 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 457
T +D V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDDVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 458 TFSISILQQIDTSIRECK 511
TF +LQQ+D S+ +C+
Sbjct: 92 TFCSGVLQQLDFSLIQCQ 109
Score = 70.9 bits (166), Expect = 7e-13
Identities = 32/43 (74%), Positives = 38/43 (88%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
AL+LAPTRELAQQI+KV+ ALGD+L K HAC+GGT+VRED R
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQR 152
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 110 bits (264), Expect = 9e-25
Identities = 51/78 (65%), Positives = 63/78 (80%)
Frame = +2
Query: 278 TDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTA 457
T +D+V E+FD M L+E LLRGIYAYGFEKPSAIQQR I+P +G DVI QAQSGTGKTA
Sbjct: 32 TSYDEVHESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTA 91
Query: 458 TFSISILQQIDTSIRECK 511
TF +LQQ+D ++ +C+
Sbjct: 92 TFCSGVLQQLDYALLQCQ 109
Score = 68.5 bits (160), Expect = 4e-12
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
AL+LAPTRELAQQI+KV+ ALGD+ K HAC+GGT+VRED R
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQR 152
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 93.9 bits (223), Expect = 8e-20
Identities = 39/73 (53%), Positives = 61/73 (83%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
+++FDDM + +++LRG+Y YG++KPS IQQRA++P ++GRDVIAQAQSGTGKT+ +IS+
Sbjct: 21 IKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAISV 80
Query: 476 LQQIDTSIRECKL 514
Q ++ S R+ ++
Sbjct: 81 CQIVNISSRKVQV 93
Score = 55.6 bits (128), Expect = 3e-08
Identities = 22/43 (51%), Positives = 33/43 (76%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
L+L+P+RELA Q +K + A+G H N + HACIGG ++ EDI++
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIKK 136
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 485 ID 490
ID
Sbjct: 193 ID 194
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
A+I+ PTRELA Q +V LG HL + GGT++++DI
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDI 243
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 75.8 bits (178), Expect = 2e-14
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F+D LK ELL GIY GFE+PS IQ+ +I + GRD++A+A++GTGKTA F I +L++
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEK 192
Query: 485 ID 490
ID
Sbjct: 193 ID 194
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
A+I+ PTRELA Q +V LG HL + GGT++++DI
Sbjct: 202 AVIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDI 243
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 485 ID 490
ID
Sbjct: 186 ID 187
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
A+IL PTRELA Q +V L +LN + GGT++R+DI
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDI 236
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 72.9 bits (171), Expect = 2e-13
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F+D LK +LL+GIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I +L++
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPVLEK 185
Query: 485 ID 490
ID
Sbjct: 186 ID 187
Score = 41.1 bits (92), Expect = 6e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
A+IL PTRELA Q +V L +LN + GGT++R+DI
Sbjct: 195 AMILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDI 236
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 72.5 bits (170), Expect = 2e-13
Identities = 33/62 (53%), Positives = 45/62 (72%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F+D LK +LLRGIY GFEKPS IQ+ +I + G D++A+A++GTGKT F I L++
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTGAFCIPTLEK 215
Query: 485 ID 490
ID
Sbjct: 216 ID 217
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDI 636
A+IL PTRELA Q +V L +L + GGT++R+DI
Sbjct: 225 AVILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDI 266
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/64 (56%), Positives = 40/64 (62%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 485 IDTS 496
I+ S
Sbjct: 108 IEPS 111
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 68.1 bits (159), Expect = 5e-12
Identities = 36/64 (56%), Positives = 40/64 (62%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F D LK ELLR I GFE PS +Q I I G DVI QA+SG GKTA F +S LQQ
Sbjct: 48 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQ 107
Query: 485 IDTS 496
I+ S
Sbjct: 108 IEPS 111
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 63.3 bits (147), Expect = 1e-10
Identities = 28/67 (41%), Positives = 47/67 (70%)
Frame = +2
Query: 287 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 466
++VV+TF ++ ++EEL++ G++ PS IQ A+ ++G+DVI AQ+G+GKT F+
Sbjct: 5 NEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFA 64
Query: 467 ISILQQI 487
I ILQ +
Sbjct: 65 IPILQAL 71
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/35 (45%), Positives = 23/35 (65%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
A +L+PTRELA QI + ALG ++ +C +GG
Sbjct: 92 ACVLSPTRELAIQIAEQFEALGADISLRCAVLVGG 126
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 60.1 bits (139), Expect = 1e-09
Identities = 24/67 (35%), Positives = 47/67 (70%)
Frame = +2
Query: 287 DQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFS 466
++ ++F+++ L L+R + G EKP+ IQQ AI ++G+DV+A+A++G+GKT +
Sbjct: 42 EEAPKSFEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYL 101
Query: 467 ISILQQI 487
+ +LQ++
Sbjct: 102 LPLLQKL 108
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/71 (42%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYA-YGFEKPSAIQQRAIMPCIQG---RDVIAQAQSGTGKTATFSIS 472
F+D+NL EL++G+Y FEKPS IQ ++ P I + +IAQA +G+GKT F +
Sbjct: 93 FEDLNLSPELMKGLYVEMKFEKPSKIQAISL-PMIMTPPHKHLIAQAHNGSGKTTCFVLG 151
Query: 473 ILQQIDTSIRE 505
+L ++D ++RE
Sbjct: 152 MLSRVDPTLRE 162
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/69 (37%), Positives = 43/69 (62%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + V+TF+D +++ I +EKP+AIQ +A+ + GRDVI A++G+GKTA
Sbjct: 222 DVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAA 281
Query: 461 FSISILQQI 487
F + ++ I
Sbjct: 282 FVLPMIVHI 290
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/63 (39%), Positives = 40/63 (63%)
Frame = +2
Query: 299 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
+TF ++NL LLR G++KP+ IQ I + GRD+ A A +G+GKTA F++ L
Sbjct: 167 DTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTL 226
Query: 479 QQI 487
+++
Sbjct: 227 ERL 229
Score = 39.9 bits (89), Expect = 0.001
Identities = 19/39 (48%), Positives = 24/39 (61%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 630
LIL PTRELA QI ++ L + KC +GG +VRE
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVRE 280
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 53.2 bits (122), Expect = 1e-07
Identities = 26/64 (40%), Positives = 41/64 (64%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
+ ++++ L ELL+ + G++KPS IQ AI +Q RDVI A++G+GKTA F + +
Sbjct: 312 MRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPM 371
Query: 476 LQQI 487
L I
Sbjct: 372 LAYI 375
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRE 630
A+++APTRELAQQI++ + +L + + +GG ++ E
Sbjct: 392 AVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEE 431
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 52.8 bits (121), Expect = 2e-07
Identities = 22/59 (37%), Positives = 38/59 (64%)
Frame = +2
Query: 311 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI 487
D+ + E+++ + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 120 DLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 178
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/43 (39%), Positives = 26/43 (60%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
L+LAPTRELA+Q++K L+ C GGT + + +R+
Sbjct: 194 LVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRE 234
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 51.6 bits (118), Expect = 4e-07
Identities = 21/59 (35%), Positives = 39/59 (66%)
Frame = +2
Query: 311 DMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI 487
++ + E+++ + + G EK IQ+ + P ++GRD+I +A++GTGKT F I I+ +I
Sbjct: 108 ELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI 166
Score = 34.3 bits (75), Expect = 0.070
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
L+LAPTRELA+Q++K L+ C GGT + + +RQ
Sbjct: 182 LVLAPTRELARQVEKEFRESAPSLDTIC--LYGGTPIGQQMRQ 222
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 51.6 bits (118), Expect = 4e-07
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Frame = +2
Query: 272 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 442
++T D V V TF +++L E L I + KP+ +Q+ AI ++GRD++A AQ+G
Sbjct: 147 IETSGDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQTG 206
Query: 443 TGKTATFSISILQQI 487
+GKTA F I+ I
Sbjct: 207 SGKTAAFCFPIISGI 221
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
A+IL+PTRELA QI K GGT + + +R+
Sbjct: 240 AVILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRE 283
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 49.6 bits (113), Expect = 2e-06
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Frame = +2
Query: 272 LDTDWDQV---VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSG 442
++T D V V TF +++L E L I + KP+ +Q+ AI GRD++A AQ+G
Sbjct: 134 IETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQTG 193
Query: 443 TGKTATFSISILQQI 487
+GKTA F I+ I
Sbjct: 194 SGKTAAFCFPIISGI 208
Score = 32.7 bits (71), Expect = 0.21
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
A+IL+PTRELA QI K GGT V + IR+
Sbjct: 227 AVILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRE 270
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 49.6 bits (113), Expect = 2e-06
Identities = 19/63 (30%), Positives = 38/63 (60%)
Frame = +2
Query: 299 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
+TF ++ E++++ + F++P+ IQ A P I G+ I QSG+GKT + + ++
Sbjct: 374 KTFAEIGCSEDMMKALKEQNFDRPAHIQAMAFSPVIDGKSCIIADQSGSGKTLAYLVPVI 433
Query: 479 QQI 487
Q++
Sbjct: 434 QRL 436
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 49.2 bits (112), Expect = 2e-06
Identities = 22/60 (36%), Positives = 37/60 (61%)
Frame = +2
Query: 302 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQ 481
TFD ++L E+ I GF+ + IQ +I P ++G+DV+ A++G+GKT F I ++
Sbjct: 90 TFDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVE 149
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
+++ PTRELA Q + V L H + IGG N R + ++
Sbjct: 165 IVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQR 207
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 49.2 bits (112), Expect = 2e-06
Identities = 23/66 (34%), Positives = 39/66 (59%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
V TF L +LL + G++ P+ IQ +AI + G+ ++A A +G+GKTA+F + I
Sbjct: 109 VLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASADTGSGKTASFLVPI 168
Query: 476 LQQIDT 493
+ + T
Sbjct: 169 ISRCTT 174
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
A++LAPTREL Q++ LG L K +GG
Sbjct: 189 AMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG 223
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 37/61 (60%)
Frame = +2
Query: 299 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
+TF+ ++L + + I GF + + IQ +AI P + G DV+ A++G+GKT F I +
Sbjct: 154 KTFESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Query: 479 Q 481
+
Sbjct: 214 E 214
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 48.8 bits (111), Expect = 3e-06
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAI-MPCIQGRDVIAQAQSGTGKTATFSISILQ 481
+ M L L++ IY F++P+ IQ+ + QG+DVI A++G+GKT F + ILQ
Sbjct: 192 WSSMRLHPLLMKSIYRLDFKEPTKIQKACFNVAAYQGKDVIGAAETGSGKTLAFGLPILQ 251
Query: 482 QI 487
++
Sbjct: 252 RL 253
Score = 28.7 bits (61), Expect = 3.5
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
ALI+ PTRELA Q+ + + +L+ K +GG
Sbjct: 282 ALIITPTRELALQVTEHLENAAKNLSVKVVPIVGG 316
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 48.8 bits (111), Expect = 3e-06
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F+ +NL + I G++ P+ IQ++ + + G DV+A A++G+GKTA F I +L++
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMARTGSGKTAAFLIPMLEK 89
Query: 485 I 487
+
Sbjct: 90 L 90
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
ALIL+PTR+LA+Q K LG + + +GG ++ + +
Sbjct: 101 ALILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEE 144
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/63 (31%), Positives = 38/63 (60%)
Frame = +2
Query: 299 ETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
++F+++ L + LL + GF P+ +Q A+ I+G D + Q+ +G+GKT + + IL
Sbjct: 110 KSFEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPIL 169
Query: 479 QQI 487
+I
Sbjct: 170 SEI 172
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/58 (36%), Positives = 37/58 (63%)
Frame = +2
Query: 314 MNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI 487
++L + L + G IQ+ ++P +QGRD+IA+A++GTGKT F I I++++
Sbjct: 107 LSLPQRLEESLEKRGITHLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIIKRL 164
Score = 31.9 bits (69), Expect = 0.37
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKC 597
L+LAPTRELA+Q++K + +L+ C
Sbjct: 184 LVLAPTRELAKQVEKEIKESAPYLSTVC 211
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
F+ + L E + G KP+ +Q + + GRDV+ AQ+G+GKTA F++ IL +
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHR 119
Query: 485 I 487
+
Sbjct: 120 L 120
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNV 624
AL++ PTRELA Q+ + ALG LN +C +GG ++
Sbjct: 129 ALVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDM 166
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 47.6 bits (108), Expect = 7e-06
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
FD L L+GI GF+ + +Q+ + +QG+D++A+A++GTGKT F + ++
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEA 141
Query: 485 I 487
+
Sbjct: 142 V 142
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 47.2 bits (107), Expect = 9e-06
Identities = 21/61 (34%), Positives = 36/61 (59%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
FD L L+ I GFE + +Q+ + +QG+DV+A+A++GTGKT F + ++
Sbjct: 384 FDQFPLSPLSLKAIKDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEA 443
Query: 485 I 487
+
Sbjct: 444 V 444
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 461 FSISILQQIDTSIR 502
+ + L + R
Sbjct: 219 YLLPALVHVSAQPR 232
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
LILAPTRELA QIQ+ G + GG IR
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 46.8 bits (106), Expect = 1e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + ++ F D N + +L I GF +P+ IQ + ++GRD+I A++G+GKT
Sbjct: 159 DVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAETGSGKTLA 218
Query: 461 FSISILQQIDTSIR 502
+ + L + R
Sbjct: 219 YLLPALVHVSAQPR 232
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
LILAPTRELA QIQ+ G + GG IR
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIR 283
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 476 LQQI 487
+ I
Sbjct: 210 ISGI 213
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
A+IL+PTRELA QI K GGT + + +R+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRE 275
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
V TF D++L + L I + +P+ +Q+ AI + RD++A AQ+G+GKTA F I
Sbjct: 150 VNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQTGSGKTAAFCFPI 209
Query: 476 LQQI 487
+ I
Sbjct: 210 ISGI 213
Score = 31.5 bits (68), Expect = 0.49
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
A+IL+PTRELA QI K GGT + + +R+
Sbjct: 232 AVILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRE 275
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 45.6 bits (103), Expect = 3e-05
Identities = 21/56 (37%), Positives = 34/56 (60%)
Frame = +2
Query: 302 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 469
TF+ L E+LR + + GF P+ IQ + +Q RD++A A++G+GKT + I
Sbjct: 436 TFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLI 491
Score = 33.9 bits (74), Expect = 0.092
Identities = 17/34 (50%), Positives = 18/34 (52%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
LILAPTRELA QIQ + G C GG
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGG 544
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 302 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 469
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
L+L+PTRELA QIQ+ + G C GG
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 302 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 469
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
L+L+PTRELA QIQ+ + G C GG
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 45.2 bits (102), Expect = 4e-05
Identities = 21/56 (37%), Positives = 35/56 (62%)
Frame = +2
Query: 302 TFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 469
+F+ ELLR + + GF P+ IQ ++ +QGRD++A A++G+GKT + I
Sbjct: 159 SFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLI 214
Score = 33.5 bits (73), Expect = 0.12
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
L+L+PTRELA QIQ+ + G C GG
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGG 267
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/64 (37%), Positives = 35/64 (54%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
++TF + NL E +L FEKPS IQ + GRD+I A++G+GKT F I
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAKTGSGKTLAFGIPA 172
Query: 476 LQQI 487
+ +
Sbjct: 173 IMHV 176
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTN 621
L+L+PTRELA QI V+ G+ K GG++
Sbjct: 195 LVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSS 230
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/61 (31%), Positives = 36/61 (59%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
FD L L+ I G+E + +Q+ + ++G+DV+A+A++GTGKT F + ++
Sbjct: 56 FDHYPLSPLSLKAIKDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEV 115
Query: 485 I 487
+
Sbjct: 116 V 116
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 42.7 bits (96), Expect = 2e-04
Identities = 19/70 (27%), Positives = 41/70 (58%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + V++F D+ + +L + GF +P+ IQ + ++GRD+I A++G+GKT +
Sbjct: 93 DIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAETGSGKTLS 152
Query: 461 FSISILQQID 490
+ + + ++
Sbjct: 153 YLLPAIVHVN 162
Score = 31.5 bits (68), Expect = 0.49
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIR 639
L+LAPTRELA QIQ+ G K GG +R
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVR 217
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++
Sbjct: 377 FDESCISPLTLKALSASGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 436
Query: 485 I 487
+
Sbjct: 437 V 437
Score = 29.9 bits (64), Expect = 1.5
Identities = 20/41 (48%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIA-LGDHLNAKCHACIGGTNVRED 633
LIL PTRELA QI A L +H IGGT R D
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLD 496
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +2
Query: 326 EELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQID 490
E +L + GF P+ IQ+ A+ GRD I AQ+G+GKT T+ + I I+
Sbjct: 85 EHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLLLIFSLIN 139
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 457 YFLYIDSTTNRYKHS*M*ALILAPTRELAQQIQKV 561
Y L I S N + S + A+I+ PTREL Q+ KV
Sbjct: 130 YLLLIFSLINPQRSS-VQAVIVVPTRELGMQVTKV 163
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 390 DVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLG 449
Query: 461 FSISILQQI 487
F + +L+ I
Sbjct: 450 FVLPMLRHI 458
Score = 32.7 bits (71), Expect = 0.21
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
L++APTREL QQI + L C GG+ V + I +
Sbjct: 473 LVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISE 515
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 41.9 bits (94), Expect = 3e-04
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = +2
Query: 356 GFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQI 487
GFE P+ +Q +AI + GRDV+ A +GTGKT + ++ +
Sbjct: 49 GFEAPTLVQAQAIPVILSGRDVLVNAPTGTGKTIAYLAPLIHHL 92
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 41.9 bits (94), Expect = 3e-04
Identities = 16/61 (26%), Positives = 34/61 (55%)
Frame = +2
Query: 305 FDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQ 484
FD+ + L+ + A G K + +Q + C+ G+D + +A++GTGK+ F + ++
Sbjct: 330 FDESCISPLTLKALSASGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAIET 389
Query: 485 I 487
+
Sbjct: 390 V 390
Score = 29.1 bits (62), Expect = 2.6
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = +1
Query: 511 ALILAPTRELAQQIQ---KVVIALGDHLNAKCHACIGGTNVRED 633
ALIL PTRELA QI K ++ D + + IGGT + D
Sbjct: 408 ALILCPTRELASQIAAEGKALLKFHDGIGVQ--TLIGGTRFKLD 449
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 41.1 bits (92), Expect = 6e-04
Identities = 21/69 (30%), Positives = 38/69 (55%)
Frame = +2
Query: 281 DWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTAT 460
D + ++ + L ++L + +EKP IQ +A+ + GRD I A++G+GKT
Sbjct: 523 DVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLG 582
Query: 461 FSISILQQI 487
F + +L+ I
Sbjct: 583 FVLPMLRHI 591
Score = 35.1 bits (77), Expect = 0.040
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVREDIRQ 642
L++APTREL QQI + L +C GG+ V + I +
Sbjct: 606 LVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISE 648
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/64 (29%), Positives = 36/64 (56%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
V F + + ++ RG+ + + +Q AI + GRD++ A++G+GKT F I I
Sbjct: 70 VRKFAQLPISDKTKRGLKDAKYVDMTDVQSAAIPHALCGRDILGAARTGSGKTLAFVIPI 129
Query: 476 LQQI 487
L+++
Sbjct: 130 LEKL 133
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
++ F DM LLR + G P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 96 IKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPM 155
Query: 476 L 478
+
Sbjct: 156 I 156
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/49 (38%), Positives = 31/49 (63%)
Frame = +2
Query: 332 LLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
+LR + GF++P+ IQ++AI + GR+ A A +G+GKT F +L
Sbjct: 152 ILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/71 (28%), Positives = 37/71 (52%)
Frame = +2
Query: 275 DTDWDQVVETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKT 454
DT + ++ + L + + + GF++PS Q I + G+DVI A++G+GKT
Sbjct: 72 DTFFADHTVSWKSLGLSDNVSIALRDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKT 131
Query: 455 ATFSISILQQI 487
+ I+ Q+
Sbjct: 132 HGYLAPIIDQL 142
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 39.9 bits (89), Expect = 0.001
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +2
Query: 338 RGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSI 469
R +Y+ GF PS IQ ++ +Q RD++A A++G+GKT + I
Sbjct: 242 RMVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLI 285
Score = 32.3 bits (70), Expect = 0.28
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
L+L+PTRELA QIQ + G C GG
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGG 338
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 296 VETFDDMNLKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISI 475
++ F DM +L + G +P+ IQ + + + GRD+I A +G+GKT F + +
Sbjct: 145 IKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPM 204
Query: 476 L 478
+
Sbjct: 205 I 205
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +2
Query: 416 DVIAQAQSGTGKTATFSISILQQIDTS 496
DVI QA+SG GKTA F +S LQQI+ S
Sbjct: 2 DVICQAKSGMGKTAVFVLSTLQQIEPS 28
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 35.9 bits (79), Expect = 0.023
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = +2
Query: 257 MDPGTLDTDWDQVVETFDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQ 430
MD +T ++ F ++ L E+++ + GFE + +Q I +DV+
Sbjct: 1 MDSSPPNTIIEEAPPRFSELKPPLSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVD 60
Query: 431 AQSGTGKTATFSISILQQIDTS 496
A +G+GKT F + ++ I S
Sbjct: 61 AATGSGKTLAFLLPFIEIIRRS 82
Score = 27.5 bits (58), Expect = 8.0
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVRED 633
+I++PTREL+ QI KV A+ AKC N E+
Sbjct: 95 VIISPTRELSAQIHKVARAVRLDF-AKCREVEADMNTLEE 133
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 34.7 bits (76), Expect = 0.053
Identities = 17/59 (28%), Positives = 30/59 (50%)
Frame = +2
Query: 320 LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDTS 496
L E+++ + GFE + +Q I +DV+ A +G+GKT F + ++ I S
Sbjct: 23 LSEDIIEALDRSGFEVCTPVQAETIPFLCSHKDVVVDAATGSGKTLAFLLPFIEIIRRS 81
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDI 636
+I++PTREL+ QI KV L N +GG V D+
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADM 135
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +2
Query: 386 RAIMPCIQGRDVIAQAQSGTGKTATFSISILQQIDT 493
+AI + G+ ++A A +G+GKTA+F + I+ + T
Sbjct: 2 QAIPAALTGKSLLASADTGSGKTASFLVPIISRCTT 37
Score = 30.7 bits (66), Expect = 0.86
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 511 ALILAPTRELAQQIQKVVIALGDHLNAKCHACIGG 615
A++LAPTREL Q++ LG L K +GG
Sbjct: 52 AMVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGG 86
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 31.9 bits (69), Expect = 0.37
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGTNVR 627
++L PTREL++Q+ +V ++ H + GG+ +R
Sbjct: 193 VVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIR 230
>At4g14365.1 68417.m02213 zinc finger (C3HC4-type RING finger)
family protein / ankyrin repeat family protein contains
Pfam profile: PF00097 zinc finger, C3HC4 type (RING
finger) and Pfam profile: PF00023 ankyrin repeat
Length = 376
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHLNAKCHACIGGT 618
LILA T + + K ++ LG ++NA C GGT
Sbjct: 46 LILACTNDDLYDVAKTLLELGSNVNAYRSGCNGGT 80
>At3g49970.1 68416.m05464 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 526
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = -3
Query: 421 NIASLDARHYCALLDCRRFFKTIGVYASQQFFFE 320
NI+ ++ + C+L+DC++ + + +A+Q F+
Sbjct: 373 NISEVEKKKVCSLMDCKKLSRDVYAHAAQNDRFQ 406
>At1g03250.1 68414.m00303 expressed protein
Length = 245
Score = 28.7 bits (61), Expect = 3.5
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = -1
Query: 618 GATNASMAFSIQVITKSYHHLLNLLGQLSCGSQDQSLHSRMLVSICCRIDIEKV-AVFPV 442
G T+ S S++ K L +L GQ+S + L+ R+L+ + R+D +++ +F
Sbjct: 20 GDTSVSRGLSLE---KKIEALESLAGQVSNRRSRRWLNDRILMELVPRLDAQEIRGLFAP 76
Query: 441 PDW 433
P W
Sbjct: 77 PPW 79
>At2g24020.1 68415.m02869 expressed protein contains Pfam domain
PF02575: Uncharacterized BCR, YbaB family COG0718
Length = 182
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Frame = +3
Query: 135 FPFSYCG*NMSYSSERRSEDWPED--SKNG 218
FPFS+ N S +S+RR+ WP+ SKNG
Sbjct: 16 FPFSHVSGNASLNSQRRT--WPKQYKSKNG 43
>At1g76010.1 68414.m08825 expressed protein
Length = 350
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Frame = +3
Query: 180 RRSEDWPEDSK---NGPSKDQGSYDGPPEWTLGHLTPT 284
RR D P + +GPS+ +G YDGP + G+ P+
Sbjct: 265 RRGYDGPPQGRGGYDGPSQGRGGYDGPSQGRGGYDGPS 302
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 213 NGPSKDQGSYDGPPEWTLGHLTPTG 287
+GPS+ +G YDGP + G+ P G
Sbjct: 289 DGPSQGRGGYDGPSQGRGGYDGPQG 313
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +2
Query: 305 FDDMN--LKEELLRGIYAYGFEKPSAIQQRAIMPCIQGRDVIAQAQSGTGKTATFSISIL 478
F D+ L +++ + FE + +Q I +DV A +G+GKT F + ++
Sbjct: 16 FSDLEPPLSGDIIEALNQSDFEFCTPVQAATIPLLCSYKDVAVDAATGSGKTLAFVVPLV 75
Query: 479 Q 481
+
Sbjct: 76 E 76
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = +1
Query: 514 LILAPTRELAQQIQKVVIALGDHL-NAKCHACIGGTNVREDIR 639
+I++PTREL+ QI V L N +GG V+ D++
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMK 136
>At4g26510.2 68417.m03818 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 317 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 409
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g26510.1 68417.m03817 uracil phosphoribosyltransferase / UMP
pyrophosphorylase (UPT1) nearly identical to SP|O65583
Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP
pyrophosphorylase) (UPRTase) {Arabidopsis thaliana}
Length = 402
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/31 (32%), Positives = 17/31 (54%)
Frame = +2
Query: 317 NLKEELLRGIYAYGFEKPSAIQQRAIMPCIQ 409
NL EE L ++ Y F+ P A ++ C++
Sbjct: 22 NLTEEELARVHEYNFDHPDAFDTEHLLSCME 52
>At4g02480.1 68417.m00335 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family; similar to
Spastin (Swiss-Prot:Q9UBP0) [Homo sapiens] and Spastin
(Fragment) (Swiss-Prot:Q9QYY8) [Mus musculus]; similar
to mitochondrial sorting protein 1 (MSP1) protein
(TAT-binding homolog 4) (Swiss-Prot:P28737)
[Saccharomyces cerevisiae]
Length = 1265
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 216 GPSKDQGSYDGPPEWTLGHLTPTGIKLSKPSMT 314
GP+ D GS G PE LG P + KP +T
Sbjct: 66 GPASDPGSESGEPE--LGSSDPQAMDAEKPVVT 96
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,793,673
Number of Sequences: 28952
Number of extensions: 295555
Number of successful extensions: 979
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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