Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0748
(779 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0) 40 0.003
SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10) 39 0.005
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18) 30 2.4
SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10) 29 3.2
SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.2
SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45) 29 5.6
SB_8320| Best HMM Match : p450 (HMM E-Value=0) 29 5.6
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1) 28 7.4
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45) 28 9.8
SB_10205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_8782| Best HMM Match : CN_hydrolase (HMM E-Value=0)
Length = 242
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +2
Query: 509 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGN 673
++ SI ER L+NT++ +GN++GKHRK H +P F ES G
Sbjct: 82 IVGGSIPERASNRK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE 139
Query: 674 TGHPVFATRYGKIAVNICF 730
+ T Y KI + IC+
Sbjct: 140 -NLTILDTEYCKIGIGICY 157
>SB_11184| Best HMM Match : CN_hydrolase (HMM E-Value=4.4e-10)
Length = 128
Score = 38.7 bits (86), Expect = 0.005
Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 5/79 (6%)
Frame = +2
Query: 509 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRKNH-----IPRVGDFNESNYYMEGN 673
++ SI ER L+NT++ +GN++GKHRK H +P F ES G
Sbjct: 38 IVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRKIHLFDIDVPGKIRFQESEVLSPGE 95
Query: 674 TGHPVFATRYGKIAVNICF 730
+ T Y KI + IC+
Sbjct: 96 -NLTILDTEYCKIGIGICY 113
>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1272
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 149 KNPRSLQLRRLTSTSPHTLSRPRTSRPDPREL*R*DSSAFHRGAHRSSSQRAKE 310
K PR R S+SP SRP+ + P PR + RG+ RS S +E
Sbjct: 1047 KRPRHQSRERRPSSSPPRRSRPQRTSPSPRR--TPEDRRRSRGSRRSPSPPKRE 1098
>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
Length = 1425
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +3
Query: 234 PENCEGRIVQHSIAVPTDR-PVNEQKKAIFNKVKKIIDVAGQEGVN 368
P N V I VP + P N+ ++A+F++V K+ ++ GQ+ V+
Sbjct: 971 PNNPSEEFVHKPILVPVMKSPRNDDERALFSRVSKVKNLWGQDLVD 1016
>SB_47367| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 914
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 152 NPRSLQLRRLTSTSPHTLSRPRTSRPDP 235
+PR + L+ S+SPHT R R+S DP
Sbjct: 687 SPRHVLLQEARSSSPHTSIRNRSSSSDP 714
>SB_33872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +2
Query: 563 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 712
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 52 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 108
>SB_8338| Best HMM Match : PA (HMM E-Value=5.7e-10)
Length = 326
Score = 29.5 bits (63), Expect = 3.2
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +2
Query: 563 NTAVVISDTGNVIGK---HRKNHIPRVGDFNE----SNYYMEGN-TGHPVFATRYGKI 712
NTA +IS+TG+VI K H K + P D + Y GN TG PV+A YG++
Sbjct: 143 NTAKIISNTGDVIYKTRTHEKVYEPSEKDPSAIPPFLAYSPSGNVTGDPVYA-NYGRV 199
>SB_4447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 29.1 bits (62), Expect = 4.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = -1
Query: 401 GHVPQLLETDDVNTLLAGNIDDFLDFIENCFLLLVDW 291
G VP + +NTLL GN D F NC LL W
Sbjct: 723 GLVPYWTKLFGINTLLVGNARDSHLFCRNCSGLLPYW 759
>SB_43440| Best HMM Match : PADR1 (HMM E-Value=0.45)
Length = 942
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = -2
Query: 514 DHIAYLMASSRRKVVVGPSSA---DSANSHHGCFSLVQNAKGMFHNSW 380
DH+ ++A +++K V + SHH CFS+ + G H W
Sbjct: 890 DHVLGMIADAKKKCTVCGTQLLFQGYTKSHHHCFSIDRLDDGQGHYKW 937
>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
Length = 1207
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -1
Query: 548 NASRPFLISRTRSHCVLDGEFPKEGRGRPVFS*FGKLAPRLLLPC 414
N+++ F + RS DGE K GR FS KLA +L C
Sbjct: 382 NSAKSFTRNGARSIVRADGEERKFGRSEEEFSDLDKLAINILYDC 426
>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
Length = 700
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 539 EKHSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYME 667
+K D LW A + D KH++N I R +F E ++Y E
Sbjct: 391 QKRFDTLWVKAKSMMDEET---KHKENAIKRSKEFEERSHYFE 430
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +1
Query: 460 TGRPRPSFGNSPSSTQCDRVLDIRKGREAFGHTLEHCGCN 579
T RPRP + P TQC V +G + C CN
Sbjct: 473 TDRPRPQTTSRPQGTQCGAVKCHERGVCIVYQGRQECRCN 512
>SB_19326| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 509 VIVSSILERDEKHSDILWNTAVVISDTGNVIGKHRK 616
++ SI ER L+NT++ +GN++GKHRK
Sbjct: 84 IVGGSIPERASNGK--LYNTSLSYDPSGNLMGKHRK 117
>SB_14352| Best HMM Match : NHL (HMM E-Value=2.8026e-45)
Length = 784
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 572 VVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNI 724
+ +S T + G+H + R +ES Y++ GH FAT+ + + I
Sbjct: 490 LTVSYTPRIHGEHEITILARGQHVDESPYHVHVKKGHMNFATKNTPVCLRI 540
>SB_10205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -2
Query: 514 DHIAYLMASSRRKVVVGPSSA---DSANSHHGCFSLVQNAKGMFHNSWKQMMLTPS 356
DH+ +++A + +K V + SH CFS+ + H W + PS
Sbjct: 923 DHVHFMIADAEKKCTVCGTQLLLQGYTKSHPQCFSIDRRDDSQGHYKWNVRLTCPS 978
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,325,381
Number of Sequences: 59808
Number of extensions: 548851
Number of successful extensions: 1595
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -