Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0743
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 54 1e-08
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 40 3e-04
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 39 8e-04
SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo... 33 0.029
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog... 31 0.21
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 29 0.48
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy... 29 0.63
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc... 28 1.1
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 28 1.5
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 27 2.5
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 27 2.5
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces... 27 3.4
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 26 5.9
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 26 5.9
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch... 25 7.8
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ... 25 7.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 25 7.8
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 54.4 bits (125), Expect = 1e-08
Identities = 34/93 (36%), Positives = 52/93 (55%)
Frame = +2
Query: 239 QLIITTKLRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALY 418
+++ T+LR LN+ N L P S LEILD++ N + K LP +F + +L+ L
Sbjct: 70 EILKFTRLRYLNIRSNVLREFPESLCRLESLEILDISRNKI--KQLPESFGALMNLKVLS 127
Query: 419 LGDNDFEFLPPEIGNLKNLQILSMRENDLIKFP 517
+ N LP I ++ NL+IL + EN+ I FP
Sbjct: 128 ISKNRLFELPTYIAHMPNLEILKI-ENNHIVFP 159
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/68 (39%), Positives = 38/68 (55%)
Frame = +2
Query: 260 LRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFE 439
L IL++S NK+ LP SFG+ L++L ++ N L E LP M +L L + +N
Sbjct: 100 LEILDISRNKIKQLPESFGALMNLKVLSISKNRLFE--LPTYIAHMPNLEILKIENNHIV 157
Query: 440 FLPPEIGN 463
F PP I N
Sbjct: 158 FPPPHIAN 165
Score = 33.5 bits (73), Expect = 0.029
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +2
Query: 338 LDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIKFP 517
LDL++ NL E I + L LG N + + PEI L+ L++R N L +FP
Sbjct: 32 LDLSHLNLRELPYEQLERIQGRIARLALGHNFIKSIGPEILKFTRLRYLNIRSNVLREFP 91
Query: 518 GS 523
S
Sbjct: 92 ES 93
Score = 33.5 bits (73), Expect = 0.029
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 469 ESTNFVD-ARERPDQVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 645
ES +D +R + Q+P G L L+ L + NRL LP I + N +L++E N
Sbjct: 98 ESLEILDISRNKIKQLPESFGALMNLKVLSISKNRLFELPTYIAHM---PNLEILKIENN 154
Query: 646 FWVPP 660
V P
Sbjct: 155 HIVFP 159
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 39.9 bits (89), Expect = 3e-04
Identities = 28/82 (34%), Positives = 40/82 (48%)
Frame = +2
Query: 260 LRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFE 439
L+ LN++ NKL+ LP S L LDL+YNN P + L L N
Sbjct: 504 LKELNIANNKLFFLPHSTRYLVNLTYLDLSYNNF--VTFPLIITELSQLETLNFSHNLLS 561
Query: 440 FLPPEIGNLKNLQILSMRENDL 505
+ +IG+L L+ L ++ NDL
Sbjct: 562 QISSKIGSLVKLKHLYLQFNDL 583
Score = 37.5 bits (83), Expect = 0.002
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
Frame = +2
Query: 260 LRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFE 439
L L++S N P LE L+ ++N L++ + + L+ LYL ND
Sbjct: 527 LTYLDLSYNNFVTFPLIITELSQLETLNFSHNLLSQ--ISSKIGSLVKLKHLYLQFNDLS 584
Query: 440 F-LPPEIGNLKNLQILSMREN 499
LP EIG LKNL+ + + N
Sbjct: 585 NRLPQEIGLLKNLETIDLSYN 605
Score = 35.5 bits (78), Expect = 0.007
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Frame = +2
Query: 257 KLRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLNE-KVLPGNFFIMDSLRALYLGDND 433
KL+ L++S N + + LE+L+++ N++ E L + +SL+ L + +N
Sbjct: 454 KLKRLDISNNLRSPRGKPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNK 513
Query: 434 FEFLPPEIGNLKNLQILSMRENDLIKFP 517
FLP L NL L + N+ + FP
Sbjct: 514 LFFLPHSTRYLVNLTYLDLSYNNFVTFP 541
Score = 25.4 bits (53), Expect = 7.8
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Frame = +2
Query: 260 LRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLN----EKVLPGNFFIMDSLRALYLGD 427
L L + N+L + P++ L LD++ NNL EK + + L L L
Sbjct: 879 LETLYANGNRLSSFPKNEALSKSLRFLDISTNNLQNLAVEKAEKKSLTKLPQLEYLNLSG 938
Query: 428 ND-FEFLPPEIGN-----LKNLQILSMRE 496
N F F E N LKNL+ LS+ +
Sbjct: 939 NTWFRFSEHEDTNFTKSYLKNLKFLSIMD 967
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 38.7 bits (86), Expect = 8e-04
Identities = 20/49 (40%), Positives = 24/49 (48%)
Frame = +2
Query: 383 NFFIMDSLRALYLGDNDFEFLPPEIGNLKNLQILSMRENDLIKFPGSWG 529
+ F L LY+ N+ LPPEIG LKNL IL N + P G
Sbjct: 176 DLFKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELG 224
Score = 37.5 bits (83), Expect = 0.002
Identities = 23/56 (41%), Positives = 32/56 (57%)
Frame = +1
Query: 511 VPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGNFWVPPIEDQLK 678
+P ELG L LRE+ L N + V+P E+GTL +L +EGN P++D K
Sbjct: 219 IPPELGLLTELREVLLFDNMISVIPAELGTL---FQLKILGIEGN----PLQDVYK 267
Score = 32.3 bits (70), Expect = 0.068
Identities = 21/70 (30%), Positives = 31/70 (44%)
Frame = +1
Query: 457 WKFEESTNFVDARERPDQVPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRL 636
+KF T ++P E+G+L L L GN + +PPE+G L + VL
Sbjct: 178 FKFSFLTELYINHNNLTRLPPEIGKLKNLVILDASGNSIKTIPPELGL--LTELREVLLF 235
Query: 637 EGNFWVPPIE 666
+ V P E
Sbjct: 236 DNMISVIPAE 245
Score = 31.9 bits (69), Expect = 0.089
Identities = 22/81 (27%), Positives = 36/81 (44%)
Frame = +2
Query: 290 LYNLPRSFGSFPVLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGNLK 469
L N+ F L L + +NNL LP + +L L N + +PPE+G L
Sbjct: 170 LRNVSTDLFKFSFLTELYINHNNLTR--LPPEIGKLKNLVILDASGNSIKTIPPELGLLT 227
Query: 470 NLQILSMRENDLIKFPGSWGS 532
L+ + + +N + P G+
Sbjct: 228 ELREVLLFDNMISVIPAELGT 248
Score = 29.9 bits (64), Expect = 0.36
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 511 VPRELGQLARLRELHLQGNRLVVLPPEIGTLDLASNKSVLRLEGN 645
V +L + + L EL++ N L LPPEIG L N +L GN
Sbjct: 173 VSTDLFKFSFLTELYINHNNLTRLPPEIGKL---KNLVILDASGN 214
>SPBC1861.08c |||U2 snRNP-associated protein Lea1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 239
Score = 33.5 bits (73), Expect = 0.029
Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +2
Query: 326 VLEILDLTYNNLNEKVLPGNFFIMDSLRALYLGDNDFEFLPPEIGN-LKNLQILSMREND 502
V + +D T N++ GNF M L+ L G+N + P+IG L NL+ LS+ +N
Sbjct: 42 VHDAIDFTDNDIRYL---GNFPRMKRLQTLLCGNNRITAIAPDIGKVLPNLKTLSLAQNH 98
Query: 503 L 505
L
Sbjct: 99 L 99
>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 982
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/45 (40%), Positives = 25/45 (55%)
Frame = -1
Query: 606 VQCSDLRRQHDEAVPLQVQLAEARQLPQLPGNLIRSFSRIDKICR 472
+ + R+HD V V+ AEARQL +L+RS I K+CR
Sbjct: 365 LDAKSIERRHD-LVSALVEDAEARQLLLDDDHLLRSIPDIPKLCR 408
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 29.5 bits (63), Expect = 0.48
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 615 AGEVQCSDLRRQHDEAVPLQVQLAEARQLPQLPG--NLIRSFSRIDKICRF 469
A +VQCS R HD A+ ++ +E +P G NLI + K C F
Sbjct: 29 AFKVQCSGCREIHDNAI--EISRSETHSIPGSKGEANLIWTCKNCRKTCSF 77
>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 454
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 154 ILLWLRNRRVMFSRENKPGISSRLDIPLSTKSI 56
IL W+ + MFSR+ P ++S L +P K I
Sbjct: 89 ILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGI 121
>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
Apc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1458
Score = 28.3 bits (60), Expect = 1.1
Identities = 30/121 (24%), Positives = 51/121 (42%)
Frame = +2
Query: 2 DVES*KSY*RSQRNK*SGNRFSRQRNI*SRRDSRLIFSGEHHSSVPKPQQNLCSACCTSQ 181
D ES +S +S RN+ + FSR++N R + ++ S +Q L + S
Sbjct: 181 DPESDQSI-KSSRNRRRESSFSREKNPDLTRSDSIHYTANTRLSEKFEEQGLAYSTIFSH 239
Query: 182 LEQLRNSKLGQ*QHSRASSQLIITTKLRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNL 361
+E + + L+ITT ++ L L+ L R + L+ L L NL
Sbjct: 240 IESFPITGSTSFDSILGNGVLVITTLVKELEKGYMMLFRLVRDRSPY-FLDSLQLHAINL 298
Query: 362 N 364
+
Sbjct: 299 S 299
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 242 LIITTKLRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLNEKVLPG 382
LI T ++ S KL+++ + FG F VLE + Y L E+ + G
Sbjct: 69 LIDKTVVQNPQYSNEKLWSIGKVFGDFYVLEYIKCKYPRLPEEAVHG 115
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 2.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 413 KHGDCP**RSSQVILFHSNYCMLDPIS 333
+HG P SS ++ ++ NYC P+S
Sbjct: 210 EHGSSPLESSSGLVYYNRNYCSTSPLS 236
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 27.1 bits (57), Expect = 2.5
Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = -1
Query: 513 NLIRSFSRIDKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFP-GNTFS---FKLLYV 346
+++ S +DK+ K+ + + YK +R SI++KFP N S LL
Sbjct: 150 SILNSLDNLDKV----KYLLHDSSSLTKAFDSYKEKRPSIVEKFPLHNLLSRWIHSLLIK 205
Query: 345 RSNISSTGKEPKLLGKLYSLFNETLRILN 259
+ + T K+ + L ++ N +L +L+
Sbjct: 206 SISYAQTEKQEAKVTPLLAIINMSLVLLS 234
>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 298
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 336 ISSTGKEPKLLGKLYSLFNETL 271
I STG++PK+LGK Y E +
Sbjct: 208 IFSTGRQPKILGKPYDEMMEAI 229
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -1
Query: 393 IKKFPGNTFSFKLLYVRSNISSTGKEPKLLGKLYSLFNETLRILNLVVMIS 241
+K N FSF L + + + + GK+ FN LR NL ++ S
Sbjct: 101 VKNRKNNIFSFDELELEER---SNRPRSIFGKIKQFFNILLRSFNLFIIFS 148
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 260 LRILNVSLNKLYNLPRSFGSFPVLEILDLTYNNLNE 367
+R LN N+L +L SF + L+ LD++YN L +
Sbjct: 648 IRDLNAVENRLSSLT-SFSNLLNLQYLDISYNQLED 682
>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1
Query: 486 DKICRFFKFPISGGRNSKSLSPKYKARRLSIIKKFPGNTFSFKL 355
+K+ + I GGRNS SL+P A + + FP + SF L
Sbjct: 681 EKLMSPYNKSIGGGRNSNSLTP--NANLGADVSFFPTDDTSFLL 722
>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 727
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 555 VQLAEARQLPQLPGNLIRSFSRIDKICRFFKFPISGGRNSK 433
+Q RQL QLP + S+SR + R P G R +
Sbjct: 324 LQATFERQLKQLPSAYVTSYSRPGRRPRSMTAPKGGARTRR 364
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 25.4 bits (53), Expect = 7.8
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = +2
Query: 254 TKLRILNVSLNKLYNLPRSFGSFPVLE--ILDLTYNNLNEKVLP 379
T L NVS LY+LP FG + + I +T NN+ P
Sbjct: 1525 TLLFFRNVSDANLYSLPMFFGELLITQQSIFAVTANNMKINACP 1568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,625,156
Number of Sequences: 5004
Number of extensions: 52165
Number of successful extensions: 187
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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