Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0742
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          31   0.24 
SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase Ubp3|Schizosacc...    27   4.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    26   5.3  
SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces ...    26   7.0  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    25   9.2  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   9.2  

>SPAC4G8.07c |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 257 VEKTPVVIKTIEEYAPGLVDNVQSYAST 340
           +E+ P+  KTI E  P ++++VQS A+T
Sbjct: 273 IEECPIATKTINEEYPKIIEDVQSRANT 300


>SPBP8B7.21 |ubp3||ubiquitin C-terminal hydrolase
           Ubp3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 309 RPGAYSSMVLITTGVFSTNSLGHFHTEYQLSLML 208
           +P AY + + I   VFS +  G  H EY L+ ++
Sbjct: 409 KPIAYPARLSIPQNVFSPSVRGSIHPEYDLNAVV 442


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
 Frame = +2

Query: 701 FREPFLFNKLS--YNKYFSNI 757
           FR+PFLF+KLS  +  +FS I
Sbjct: 131 FRKPFLFDKLSPYFTHFFSEI 151


>SPAC323.06c |uba5||NEDD8 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +2

Query: 281 KTIEEYAPGLVD--NVQSYASTAWSGLKKYS--SDYYQITTDYLVTKV 412
           K +EEY  G  D  N++  +S +W   K+Y   S+ Y++  D    K+
Sbjct: 240 KIMEEYK-GKCDSENIEEASSNSWKAFKEYKLPSNVYEVLHDTRCVKI 286


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 299 APGLVDNVQSYASTAWSGLKKYSSDYYQITTDYLV 403
           A G+V+    Y+    +  KKY+ DYY    D +V
Sbjct: 703 AGGVVEATMCYSGDMLNPKKKYNLDYYVNLVDKMV 737


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 321 TLSTRPGAYSSMVLITTGVFSTNSLGHFHTE--YQLSLM 211
           T S   GA+S M+LI   + S N L H      Y L L+
Sbjct: 431 TDSAANGAFSKMILIDLAMHSANRLEHMQVPDGYLLQLL 469


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,534
Number of Sequences: 5004
Number of extensions: 73038
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)