Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0742
         (779 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0368 + 17005231-17005437,17005707-17005963,17006061-170061...    30   1.8  
10_08_0568 + 18837195-18837203,18837694-18837741,18837853-188379...    28   7.2  
01_03_0298 + 14771001-14771360                                         28   9.6  

>09_04_0368 +
           17005231-17005437,17005707-17005963,17006061-17006115,
           17006196-17006276,17006357-17006453,17006560-17006627,
           17006788-17006886,17007008-17007049,17007124-17007263,
           17007882-17008018,17008275-17008444
          Length = 450

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -2

Query: 328 ALNVVYKTRSILFNGFNNDRRFLHQ*SWTFPYRIPAFFNAMK 203
           AL+  Y   S+LFNG  +DRR++ +     P R P+  N+ K
Sbjct: 103 ALSAPYACSSVLFNGNGSDRRYIGR--GKLPSRRPSGINSKK 142


>10_08_0568 +
           18837195-18837203,18837694-18837741,18837853-18837912,
           18837986-18838155,18838297-18838369,18838529-18838594,
           18838685-18838768,18838950-18839027,18839122-18839205,
           18839562-18839641,18839791-18839848,18839933-18840235,
           18840361-18840531,18840972-18841204,18841303-18841705,
           18841961-18842212,18842293-18842790,18843073-18843170,
           18843314-18843413,18843653-18843798,18843912-18844068
          Length = 1056

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 31  RESCSKIW-AFLSIVNRLGRRHCPPLLAVTYGLKPMHRFTTHKLLKYV 171
           R+ C+K+W A    +N+LG ++ PP       + P+ ++    L K V
Sbjct: 739 RQWCNKLWNAVRFAMNKLGDQYTPPAAIALCSMPPLCKWILSALNKAV 786


>01_03_0298 + 14771001-14771360
          Length = 119

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 269 PVVIKTIEEYAPGLVDNVQSYASTAWSGLKKYSSDYYQITTDYLVTKVF 415
           P + + + E A GLV  V ++A   W G ++    Y  +    ++ ++F
Sbjct: 60  PAMERLVAEVARGLVGGVDAHARDRWGGRREEHMRYGALIGGPIILEIF 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,284,746
Number of Sequences: 37544
Number of extensions: 403866
Number of successful extensions: 905
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)