Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0742
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.26 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    24   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 0.26
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 574 CSLVSR*LVSIILYLFLIKLQYCG 645
           C +V   LVSII+Y+  I LQY G
Sbjct: 403 CLIVVIALVSIIMYIAFIILQYAG 426



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 562 IRDYCSLVSR*LVSIILYLFLIKLQY 639
           + DYC++V+  LV  IL   L+   Y
Sbjct: 358 LEDYCNIVATHLVCGILGSILVPFFY 383


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +1

Query: 13  TSLRVQRESCSKIWAFLS-IVNRLGRRHCPPLLAV 114
           ++ +++ + C ++W   S ++N + R  CPP L V
Sbjct: 121 SAYKIEIDMCDRLWVLDSGLINNV-RSVCPPQLLV 154


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 393 TIWLLKFLLVIGPQRYFRIKRS 458
           T+W+L F++   P   ++ KRS
Sbjct: 188 TVWILSFVICFPPLVGWKDKRS 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,062
Number of Sequences: 438
Number of extensions: 5138
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)