Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0742
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10830.1 68416.m01304 hypothetical protein                          29   3.5  
At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containi...    29   4.6  
At5g39770.1 68418.m04817 repair endonuclease family protein cont...    28   6.0  

>At3g10830.1 68416.m01304 hypothetical protein 
          Length = 147

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 424 ITNKNFSNQIVSCDLIIVTRVLFESAPGRRCIALNVVYKT 305
           +T K+F + IVS  L  +TR LF     + C   ++++KT
Sbjct: 34  LTEKDFVDAIVSVSLKDLTRSLFVRFEAKACPKFDLIHKT 73


>At3g50420.1 68416.m05515 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 794

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = -2

Query: 427 PITNKNFSNQIVSCDLIIVTRVLFESAPGRRCIALNVVYKTRS 299
           P  N N  +  V C  +   R +F+  P R  ++ N +Y   S
Sbjct: 132 PYANNNLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYS 174


>At5g39770.1 68418.m04817 repair endonuclease family protein
           contains Pfam PF02732 : ERCC4 domain; similar to MUS81
           endonuclease (GI:16755674) [Mus musculus]; similar to
           repair endonuclease (TIGR:At5g41150) [Arabidopsis
           thaliana]
          Length = 1242

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 203 LHSIKESWYSVWKCPRLLVEKTPVV 277
           L + K  WYS W C   L+EK  VV
Sbjct: 864 LGTSKREWYSGWSCMSKLIEKGLVV 888


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,134,888
Number of Sequences: 28952
Number of extensions: 356968
Number of successful extensions: 771
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)