Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0741
         (744 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    33   0.002
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    33   0.002
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.6  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    23   2.6  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   2.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   2.6  

>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 334 IAALSGGELQRFACAMVCIQNGDIFMFDEPSSYLDVKQRLNAARTIRSLIHPDKFII 504
           I  +SGGE +R + A   + N  +   DEP+S LD    L   + ++ +    K +I
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVI 273



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   GEVLGLVGQNGIGKSTALKILAGKQKPNL 88
           GE+L ++G +G GK+T L  L      NL
Sbjct: 104 GELLAILGSSGAGKTTLLNTLTFHTSSNL 132


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 17/57 (29%), Positives = 28/57 (49%)
 Frame = +1

Query: 334 IAALSGGELQRFACAMVCIQNGDIFMFDEPSSYLDVKQRLNAARTIRSLIHPDKFII 504
           I  +SGGE +R + A   + N  +   DEP+S LD    L   + ++ +    K +I
Sbjct: 217 IKGISGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVI 273



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 2   GEVLGLVGQNGIGKSTALKILAGKQKPNL 88
           GE+L ++G +G GK+T L  L      NL
Sbjct: 104 GELLAILGSSGAGKTTLLNTLTFHTSSNL 132


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 304 AFYILQIGFSFHLFC 260
           A+Y+ + G S+HL C
Sbjct: 574 AYYVCRSGLSYHLSC 588


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 360 QLSSGKCRNLTITDV**IKHSTYYRLVFHFIF 265
           +L   +C +  + +   +KH  YY L  H  F
Sbjct: 11  RLDQDQCSHRIVREHLGLKHDNYYELETHIFF 42


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 360 QLSSGKCRNLTITDV**IKHSTYYRLVFHFIF 265
           +L   +C +  + +   +KH  YY L  H  F
Sbjct: 325 RLDQDQCSHRIVREHLGLKHDNYYELETHIFF 356


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 360 QLSSGKCRNLTITDV**IKHSTYYRLVFHFIF 265
           +L   +C +  + +   +KH  YY L  H  F
Sbjct: 558 RLDQDQCSHRIVREHLGLKHDNYYELETHIFF 589


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = -1

Query: 360 QLSSGKCRNLTITDV**IKHSTYYRLVFHFIF 265
           +L   +C +  + +   +KH  YY L  H  F
Sbjct: 558 RLDQDQCSHRIVREHLGLKHDNYYELETHIFF 589


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,449
Number of Sequences: 336
Number of extensions: 4352
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19819879
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)