Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0741
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   9.2  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   9.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.2  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 731 VHPFYLFFGS*LSYLEHQRFSTESHVFGGYKPIKEYV 621
           ++P Y F  S +   ++ + S  S V  G   I+ Y+
Sbjct: 165 IYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYI 201


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 731 VHPFYLFFGS*LSYLEHQRFSTESHVFGGYKPIKEYV 621
           ++P Y F  S +   ++ + S  S V  G   I+ Y+
Sbjct: 165 IYPNYFFDSSVIEEAQNLKMSRGSSVVTGMNNIETYI 201


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 5/6 (83%), Positives = 5/6 (83%)
 Frame = +2

Query: 575 CIWCCD 592
           C WCCD
Sbjct: 12  CCWCCD 17


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -3

Query: 718  ISSSVADSATLNTSDSVRNLMFSVGTNPSRN 626
            + + V    T+ +S S  N   ++ T PSRN
Sbjct: 1272 VYARVIAPTTITSSQSPGNQQQTIQTQPSRN 1302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,018
Number of Sequences: 438
Number of extensions: 4865
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)