Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0739
         (757 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    26   6.7  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    26   6.7  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.7  

>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +3

Query: 630 KLGFVLSHIQYALRHVDVVYL 692
           K G+VL  IQ  + HVDVV L
Sbjct: 536 KFGYVLLGIQILILHVDVVIL 556


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 421 ITIKTEKLQFYNYSFGVDKNKQEFWTSILKVRNI 320
           I + T  + F N    +++  Q+FW S+ K RN+
Sbjct: 98  IRLLTRIIPFLNEKLDLEEWHQKFWWSLRKKRNL 131


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 257 MILDIVLNNFRNNSSINIYSPESGF 183
           M++DIV N F N  +I I++ ++ F
Sbjct: 1   MVIDIVTNQFSNLQNIKIFTWKANF 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,688
Number of Sequences: 5004
Number of extensions: 57875
Number of successful extensions: 122
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)