Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0737
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 64 1e-11
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 57 2e-09
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|... 35 0.010
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 28 0.84
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 27 1.5
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 27 2.0
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom... 27 2.6
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo... 27 2.6
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 27 2.6
SPBC215.15 |sec13||COPII-coated vesicle component Sec13|Schizosa... 26 3.4
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 26 4.5
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 25 6.0
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 6.0
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 25 7.9
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 25 7.9
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 64.1 bits (149), Expect = 1e-11
Identities = 29/65 (44%), Positives = 41/65 (63%)
Frame = +1
Query: 7 NRALSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTP 186
+R+LSIW ++L RPL+ ++F S+ D+ WS DGLSL CS DG V F +E G
Sbjct: 300 DRSLSIWSSALPRPLLSCQNVFQKSIGDVCWSPDGLSLFLCSYDGNVLVCTFEKEEFGDM 359
Query: 187 LTLEE 201
++ EE
Sbjct: 360 VSDEE 364
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 462 TRTSDGKRRITPVFIPTRSSTPMNPSALSPAARRTVS 572
T T +GK+R+ P + T S+TP S + T S
Sbjct: 478 TITKEGKKRVAPQLLTTLSATPSTSRLASTQLQHTGS 514
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 57.2 bits (132), Expect = 2e-09
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Frame = +1
Query: 16 LSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPL-T 192
+SIW T+ RP+ VIH+L S +D+ WS+ G L S DG + LQF E G + T
Sbjct: 309 VSIWNTACARPMAVIHELSCSSFVDLQWSTSGFELYGVSLDGNLMLLQFEESEFGEKMDT 368
Query: 193 LE--EKNAFYEKIYGKVLANESGAISHRT 273
+ + +++ K N++ A T
Sbjct: 369 IHYPDDLSYFNSSRSKAHVNKNAAADRTT 397
>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 512
Score = 34.7 bits (76), Expect = 0.010
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +1
Query: 13 ALSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIG 180
A+ I+ T +P +L ++ DI+W+ DG LL S DG + + F E+G
Sbjct: 399 AVYIYDTQTCKPFYRAVNLHYSNLTDIAWNDDGNVLLMTSIDGFCSVITFEPGELG 454
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 28.3 bits (60), Expect = 0.84
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 16 LSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTV 147
+ IW+ R L+ + + D+S+S DG S L+ S D T+
Sbjct: 291 IKIWEVYHDRSLLRTFQGHARPIRDLSFSQDGRSFLSTSFDKTI 334
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 27.5 bits (58), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +1
Query: 73 SDSVLDISWSSDGLSLLACSSDGTV 147
+D+V DI S DG ++L SSD T+
Sbjct: 216 TDNVRDILISDDGRTILTASSDATI 240
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = +1
Query: 67 LFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKE 174
L S SV+D+S + +L +CS DG + T +E
Sbjct: 78 LHSASVVDLSVDLESENLASCSMDGKMIISNITTRE 113
>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 592
Score = 26.6 bits (56), Expect = 2.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 233 KFWRTSPGRSLIELTGRVPGD 295
+ W T PG SL + GR+ GD
Sbjct: 359 QIWLTRPGESLDTVAGRIGGD 379
>SPCC338.10c |cox5||cytochrome c oxidase subunit
V|Schizosaccharomyces pombe|chr 3|||Manual
Length = 174
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 136 DGTVACLQFTNKEIGTPLTLEEKNAFYEKIYGKVLANESGAISHRT-YW 279
DG + L K+ T L++EEK A Y +G+ IS +T +W
Sbjct: 52 DGLITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSHISQKTVFW 100
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 2.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = +1
Query: 34 SLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTV 147
+LKR +I + D+V I WS D LL+CS D +V
Sbjct: 244 NLKRVFRLIGHI--DTVAYIRWSPDDRYLLSCSCDKSV 279
>SPBC215.15 |sec13||COPII-coated vesicle component
Sec13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +1
Query: 61 HDLFSDSVLDISWSSDGL-SLLAC-SSDGTVACLQF 162
H SV +SW+ +LLAC SSDG V+ L+F
Sbjct: 95 HTAHQASVNAVSWAPHEYGALLACASSDGKVSVLEF 130
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 420 GTPRPLRPLDRQI-ETRTSDGKRRITPVFIPTRSSTPMNPSALS 548
GTPRP+ P+ + + +T + K R V TP NPS S
Sbjct: 99 GTPRPMHPISHPLSQHKTPEFKHRKRNV---ESILTPKNPSLFS 139
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 6.0
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = -2
Query: 200 SSRVSGVPISLFVNCRQATVPSE---LQAKRLSPSELQDISRTLSLNRS 63
S+ +SG + L VN A V ++ L+ L PS+++DISR S R+
Sbjct: 177 SANMSG-ELQLSVNIPSARVSTKWKGLENPELDPSQVEDISRHPSQTRA 224
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +2
Query: 146 SLAYSLRTKKSVHHSLWRKRTHSTRRSMVKFWRTSPGRSLIELTGRVPGDPARQ 307
S AY+ R S+ + W + + S S +F R G+ L+ P P +Q
Sbjct: 172 SSAYATRINGSLRNDKWNRSSFSEALSSSRFSRPQVGQQQ-PLSSAFPFQPVKQ 224
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 7.9
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 82 VLDISWSSDGLSLLACSSDGTVACLQFTNKEI 177
V DISWSS+G+ + A G + + E+
Sbjct: 233 VTDISWSSNGMYIAASFKKGGILIWDTQSHEV 264
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.0 bits (52), Expect = 7.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 79 SVLDISWSSDGLSLLA-CSSDGTVACLQFTNKEIGTPLTL 195
+V D+ WS ++ + CS DGT NK+ + LT+
Sbjct: 293 AVEDLQWSPSEKNVFSSCSCDGTFRIWDVRNKQKTSALTV 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,012,080
Number of Sequences: 5004
Number of extensions: 35762
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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