Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0737
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   6e-19
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)                  35   0.041
SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14)                  31   0.51 
SB_51692| Best HMM Match : WD40 (HMM E-Value=0.24)                     31   0.51 
SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_6741| Best HMM Match : WD40 (HMM E-Value=0)                         29   2.0  
SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)              29   2.0  
SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_30333| Best HMM Match : DUF1168 (HMM E-Value=3.6)                   28   6.2  
SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)                   27   8.2  
SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08)                  27   8.2  
SB_14135| Best HMM Match : rve (HMM E-Value=0.0016)                    27   8.2  
SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.2  

>SB_47540| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 91.1 bits (216), Expect = 6e-19
 Identities = 37/74 (50%), Positives = 57/74 (77%)
 Frame = +1

Query: 10  RALSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPL 189
           +A++   TSLKRPLVV+HDLF+ S++D+SWS  G  LL CS DG++A   FT++E+G  +
Sbjct: 226 KAITCVLTSLKRPLVVVHDLFNHSIMDVSWSQSGFELLVCSWDGSIAYANFTSEELGKAM 285

Query: 190 TLEEKNAFYEKIYG 231
           + EEK+ F++++YG
Sbjct: 286 SQEEKDKFHKQVYG 299



 Score = 35.9 bits (79), Expect = 0.023
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 423 TPRPLRPLDRQIETRTSDGKRRITPVFI 506
           +P  +  L++Q ETRT DG+RRITPV +
Sbjct: 381 SPCKMNILEQQRETRTKDGRRRITPVLV 408


>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
          Length = 1093

 Score = 35.1 bits (77), Expect = 0.041
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 7   NRALSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSD 138
           + ++ +W T L    V  H     +V D+ WS  G+ LL+C  D
Sbjct: 226 DNSVRVWDTYLNGICVKSHTFHGGAVKDVKWSPGGMQLLSCGYD 269


>SB_51892| Best HMM Match : WD40 (HMM E-Value=8.7e-14)
          Length = 353

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 67  LFSDSVLDISWSSDGLSLLACSSDGTV 147
           ++S SV DISWS D  +L AC +D  V
Sbjct: 177 IYSKSVNDISWSPDCATLFACVNDRAV 203


>SB_51692| Best HMM Match : WD40 (HMM E-Value=0.24)
          Length = 191

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +1

Query: 67  LFSDSVLDISWSSDGLSLLACSSDGTV 147
           ++S SV DISWS D  +L AC +D  V
Sbjct: 62  IYSKSVNDISWSPDCATLFACVNDRAV 88


>SB_16236| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2317

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +1

Query: 73   SDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPLTLEEKNAFYEKIYGKVLANES 252
            +D +   S S+DG +    S+DGT A    T   I  P++ +E  A      G + ++ S
Sbjct: 2210 TDGITVSSMSTDGATAAPMSTDGTNAAPMSTGGTIAAPISTDETTASSMSTDGTIASSMS 2269



 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = +1

Query: 16  LSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPLTL 195
           +S+  T        +H L +D +   +  +DG +L+  S+DGT A    T+    +P++ 
Sbjct: 485 MSVTATMSSERTTDLH-LSTDRITAATIGTDGTTLIPMSTDGTTAAPMSTDGTTTSPISS 543

Query: 196 EEKNA 210
           + K A
Sbjct: 544 DGKTA 548



 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 100 SSDGLSLLACSSDGTVACLQFTNKEIGTPLTLEEKNA 210
           SSDG +    S+DGT A    T++   TP++++   A
Sbjct: 542 SSDGKTAAPMSTDGTAASSMGTDRTTATPMSIDGTTA 578


>SB_6741| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 714

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 22  IWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVA 150
           IW   LK+P+  + D    SV   +++ DGL ++  +S+G +A
Sbjct: 124 IWDVLLKKPVRCV-DKLESSVTACAFTPDGLHIITGTSEGKLA 165


>SB_24139| Best HMM Match : WD40 (HMM E-Value=8.29989e-42)
          Length = 198

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 22  IWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVA 150
           IW   LK+P+  + D    SV   +++ DGL ++  +S+G +A
Sbjct: 124 IWDVLLKKPVRCV-DKLESSVTACAFTPDGLHIITGTSEGKLA 165


>SB_37875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 544

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +1

Query: 82  VLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPLTLEEKNAF 213
           +++I+ +S+G  +++CS D T+       + + T  TL+  N+F
Sbjct: 202 IINIAVASNGKYIMSCSKDTTIIIWDLKGEVLATLDTLQINNSF 245


>SB_52576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1649

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 58   IHDLFSDSVLDISWSSDGLSLLACSSDGTVA 150
            I+      V  ++WS DGLSL + S+D  +A
Sbjct: 1447 INSNHDSGVRTLAWSPDGLSLYSASTDNKIA 1477


>SB_19258| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 459

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +1

Query: 7   NRALSIWQTSLKRPLVVIHDLF-SDSVLDISWSSDGLSLLACSSDGTVACLQFTNKE 174
           ++ + IW T       ++H    S  + ++ WS  G  L AC S+ T    +F  +E
Sbjct: 354 DKRVHIWSTQTGN---LVHSFQGSGGIFEVQWSPRGDKLAACFSNNTFCTKEFLKEE 407


>SB_30333| Best HMM Match : DUF1168 (HMM E-Value=3.6)
          Length = 213

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 448 TDRSRRARPTGRDASRPSSYPLAARRQ*IPRLSARRLGELF 570
           TD+  + RPT R+ S PS +P A     + ++ +R  GE F
Sbjct: 153 TDKKGKQRPTRRNRSDPSVWPYA-----VSQICSRERGEQF 188


>SB_36694| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1803

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = +1

Query: 73   SDSVLDISWSSDGLSLLACSSDGTV 147
            SD V+D+++SSDG  L + S D TV
Sbjct: 1458 SDWVMDVAFSSDGALLTSGSRDRTV 1482


>SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)
          Length = 587

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = +1

Query: 73  SDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPLTLEEKNAFYEKIYG 231
           S S +  S+S DG  L+  S D  V        + G P +  +KN FYE   G
Sbjct: 94  SSSQIKASFSHDGQYLICGSEDHFV---YIWRTQHGIPSSRRDKNEFYESFSG 143


>SB_26997| Best HMM Match : WD40 (HMM E-Value=1.3e-08)
          Length = 175

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 73  SDSVLDISWSSDGLSLLACSSDGTV 147
           S  VLD+ W+ D   L +C ++GTV
Sbjct: 140 SAPVLDVCWNYDESLLASCDTEGTV 164


>SB_14135| Best HMM Match : rve (HMM E-Value=0.0016)
          Length = 576

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 125 LVVRMERSLAYSLRTKKSVH-HSLWRKRTHSTRRSMVKFWRTSPGRSLIELTGRVPGDPA 301
           LV+   RSL   LR K  ++ H+    R H    S  ++ R  P R     T    G+P 
Sbjct: 125 LVLSTSRSLTNKLRNKLLMNLHAGASCRVHPYTHSYRRYRRCDPARKCTATTACRSGEPT 184

Query: 302 R 304
           R
Sbjct: 185 R 185


>SB_7379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 413

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/22 (59%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +1

Query: 163 TNKEIGT-PLTLEEKNAFYEKI 225
           T+KE GT PL+L   N FYE+I
Sbjct: 325 TDKETGTKPLSLNTLNCFYERI 346


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,949
Number of Sequences: 59808
Number of extensions: 293879
Number of successful extensions: 1194
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)