Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0737
(573 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 77 6e-15
At5g64630.3 68418.m08123 transducin family protein / WD-40 repea... 38 0.004
At5g64630.2 68418.m08122 transducin family protein / WD-40 repea... 38 0.004
At5g64630.1 68418.m08121 transducin family protein / WD-40 repea... 38 0.004
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 36 0.025
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 33 0.10
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 31 0.72
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 1.7
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea... 29 1.7
At3g10572.1 68416.m01269 3-phosphoinositide-dependent protein ki... 29 2.2
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 29 2.2
At5g57690.1 68418.m07211 diacylglycerol kinase, putative contain... 29 2.9
At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6 ... 29 2.9
At4g36660.1 68417.m05202 expressed protein 28 3.8
At4g07410.1 68417.m01136 transducin family protein / WD-40 repea... 28 5.1
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 28 5.1
At2g18730.1 68415.m02181 diacylglycerol kinase, putative contain... 27 6.7
At5g13480.1 68418.m01554 WD-40 repeat family protein similar to ... 27 8.9
At1g27470.1 68414.m03349 transducin-related / WD-40 repeat prote... 27 8.9
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 77.4 bits (182), Expect = 6e-15
Identities = 36/85 (42%), Positives = 49/85 (57%)
Frame = +1
Query: 7 NRALSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTP 186
+R +++W T RPL V F SV+D+SWS DG SL ACS DGTVA + F KE+G
Sbjct: 306 DRTITVWTTGSARPLFVAKHFFGQSVVDLSWSPDGYSLFACSLDGTVAMIHFDPKELGVR 365
Query: 187 LTLEEKNAFYEKIYGKVLANESGAI 261
LT E + + YG V ++ +
Sbjct: 366 LTDTELDELKKSRYGDVRGRQANLV 390
>At5g64630.3 68418.m08123 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 428
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 22 IWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPLTL 195
I+ T P+ V+ L ++ DI+WS + L S DG ++F +KE+G +++
Sbjct: 265 IYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSI 322
>At5g64630.2 68418.m08122 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 487
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 22 IWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPLTL 195
I+ T P+ V+ L ++ DI+WS + L S DG ++F +KE+G +++
Sbjct: 324 IYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSI 381
>At5g64630.1 68418.m08121 transducin family protein / WD-40 repeat
family protein Similar to (SP:Q13112) Chromatin assembly
factor 1 subunit B (CAF-1 subunit B) (CAF-Ip60) [Homo
sapiens]
Length = 397
Score = 38.3 bits (85), Expect = 0.004
Identities = 17/58 (29%), Positives = 31/58 (53%)
Frame = +1
Query: 22 IWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPLTL 195
I+ T P+ V+ L ++ DI+WS + L S DG ++F +KE+G +++
Sbjct: 324 IYDTECVAPIAVLAGLHYAAITDITWSPNASYLALSSQDGYCTLVEFEDKELGEAVSI 381
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 35.5 bits (78), Expect = 0.025
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +1
Query: 4 GNRALSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEI-G 180
G+ + +W + PL + VL ++WS DG L++ S G + C E+ G
Sbjct: 129 GDTTVRLWDLYTETPLFTCKG-HKNWVLTVAWSPDGKHLVSGSKSGEICCWNPKKGELEG 187
Query: 181 TPLTLEEK 204
+PLT +K
Sbjct: 188 SPLTGHKK 195
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 33.5 bits (73), Expect = 0.10
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 19 SIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGT 144
++W K+ +H + V D+ WS GLSLL+C D T
Sbjct: 189 NVWSNDKKKVRAFLHH--NAPVKDVKWSKQGLSLLSCGYDCT 228
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 30.7 bits (66), Expect = 0.72
Identities = 13/52 (25%), Positives = 28/52 (53%)
Frame = +1
Query: 7 NRALSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQF 162
++++ IW S+K +V + + ++ W+ +G + AC +D +V L F
Sbjct: 562 DKSIHIW--SIKEGKIVKTYTGNGGIFEVCWNKEGNKIAACFADNSVCVLDF 611
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.5 bits (63), Expect = 1.7
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 76 DSVLDISWSSDGLSLLACSSDGTVACLQF-TNKEI 177
+++LD+ W+SDG +++ S D TV T K+I
Sbjct: 97 NAILDLHWTSDGSQIVSASPDKTVRAWDVETGKQI 131
>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
family protein similar to Transcriptional repressor
rco-1 (SP:P78706) [Neurospora crassa]; similar to
TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
Length = 648
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +1
Query: 4 GNRALSIWQTSL---KRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTV 147
G+ ++ IW RP + + +D + + +SSDG LL+ S DG++
Sbjct: 347 GDGSIQIWSLKPGWGSRPDIYVGKAHTDDITSVKFSSDGRILLSRSFDGSL 397
>At3g10572.1 68416.m01269 3-phosphoinositide-dependent protein
kinase-1, putative annotation temporarily based on
supporting cDNA gi|17065215|gb|AY062684.1|
Length = 333
Score = 29.1 bits (62), Expect = 2.2
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +2
Query: 149 LAYSLRTKKSVHHSLWRKRTHSTRRSMVKFWR 244
+ Y+L+ K++ + R++ STR+++V FW+
Sbjct: 281 ICYALKRKRAALIRIIRRQMESTRKAIVDFWK 312
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Frame = +1
Query: 4 GNRALSIW-QTSLKRPLV---VIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNK 171
G+ + IW Q+SL R V+ + + +V +WS G L S DGT +
Sbjct: 47 GDNTVRIWEQSSLSRSWTCKTVLEETHTRTVRSCAWSPSGQLLATASFDGTTGIWKNYGS 106
Query: 172 EIGTPLTLE 198
E TLE
Sbjct: 107 EFECISTLE 115
>At5g57690.1 68418.m07211 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 498
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +3
Query: 84 PGYILELRWAQPFSL*FGWNGRLPTVYEQRNRYTTHSGGKERILREDLW 230
P I+ L S FGW G P ++ + T H I R D W
Sbjct: 188 PVSIMPLGTGNDLSRSFGWGGSFPFAWKSAIKRTLHRASVAPISRLDSW 236
>At5g13840.1 68418.m01618 WD-40 repeat family protein contains 6
WD-40 repeats (PF00400); similar to Fzr1
(GI:6463679){Homo sapiens}
Length = 481
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +1
Query: 16 LSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFTNKEIGTPL 189
L +W ++P++ + + + +V I+WS SLLA C++F N G L
Sbjct: 322 LLVWNNHSQQPILKLTE-HTAAVKAITWSPHQSSLLASGGGTADRCIRFWNTTNGNQL 378
>At4g36660.1 68417.m05202 expressed protein
Length = 159
Score = 28.3 bits (60), Expect = 3.8
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 170 KKSVHHSLWRKRTHSTRRSMVKFWRTSPGRSLIELTGRVPG 292
+K V H +W T+S R + +FW+ + + ELT VPG
Sbjct: 93 EKVVKH-MWDVYTNSRRIKLPRFWQEAFVAAYEELTSDVPG 132
>At4g07410.1 68417.m01136 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400) (2
weak); similar to Vegetatible incompatibility protein
HET-E-1 (SP:Q00808) {Podospora anserina}
Length = 815
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 73 SDSVLDISWSSDGLSLLACSSDGTVACLQFTN 168
S L ++WS D + + SSDG + C T+
Sbjct: 198 SGRALSVTWSPDAKRIFSGSSDGLIRCWDATS 229
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Frame = +1
Query: 4 GNRALSIWQTSL---KRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTV 147
G+ + +W+ + K +V + + V ++WS DG L +CS D V
Sbjct: 410 GSGSFEVWKCEISTRKFEQIVSTNAHNQVVTGLAWSYDGRCLYSCSQDNYV 460
>At2g18730.1 68415.m02181 diacylglycerol kinase, putative contains
INTERPRO domain, IPR001206, DAG-kinase catalytic domain
Length = 488
Score = 27.5 bits (58), Expect = 6.7
Identities = 13/49 (26%), Positives = 18/49 (36%)
Frame = +3
Query: 84 PGYILELRWAQPFSL*FGWNGRLPTVYEQRNRYTTHSGGKERILREDLW 230
P ++ L S FGW G P + + T H + R D W
Sbjct: 189 PVGVIPLGTGNDLSRSFGWGGSFPFAWRSAVKRTLHRASMGPVARLDSW 237
>At5g13480.1 68418.m01554 WD-40 repeat family protein similar to
WD-repeat protein WDC146 (SP:Q9C0J8|) {Homo sapiens};
contains 3 weak Pfam PF00400: WD domain, G-beta repeats;
Length = 711
Score = 27.1 bits (57), Expect = 8.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = +1
Query: 16 LSIWQTSLKRPLVVIHDLFSDSVLDISWSSDGLSLLACSSDGTVACLQFT 165
L WQ ++ + +S+ D+S+ L +CS D TV FT
Sbjct: 189 LKYWQNNMNN-VKANKTAHKESIRDLSFCKTDLKFCSCSDDTTVKVWDFT 237
>At1g27470.1 68414.m03349 transducin-related / WD-40 repeat
protein-related contains 6 WD-40 repeats (PF00400) (2
weak); related to KIAA1988 protein (GI:18916910) [Homo
sapiens]
Length = 810
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 85 LDISWSSDGLSLLACSSDGTVAC 153
L ++WS+D + + SSDG + C
Sbjct: 202 LSVTWSADAQRIFSGSSDGLIRC 224
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,634
Number of Sequences: 28952
Number of extensions: 199427
Number of successful extensions: 729
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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