Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0736
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    27   3.1  
SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13 |Schizo...    27   4.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    26   5.4  

>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 513 GFTCPPAPLDAIGNPLNNVINYKYEGNCYYFFS 611
           G T PP P +++ N +N     +     Y++ S
Sbjct: 340 GLTLPPVPTESVPNDINIYFGTRLPNEIYFYIS 372


>SPAC3H1.13 |ppk13||serine/threonine protein kinase Ppk13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +1

Query: 451 PDFSRCDWADLVPSCDAEKSWVSLAPLLLW 540
           P F++   A ++ +CD E S++S   +L+W
Sbjct: 113 PYFAKGSVAQVIRNCDIEGSYISEKRILVW 142


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 23  SKKKDALLHLPRLASGCKHV-QSTPAAATAQ 112
           +KKK  L HL + +S   H+  +TP+  TAQ
Sbjct: 344 NKKKKGLFHLHKGSSSAVHIAPATPSLKTAQ 374


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,034
Number of Sequences: 5004
Number of extensions: 76767
Number of successful extensions: 192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)