Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0736
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 31 0.79
04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834 31 1.4
12_02_0875 - 23920023-23920967,23921045-23921599,23921678-239220... 30 2.4
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 30 2.4
09_04_0563 + 18546967-18547407,18547503-18548007,18548271-185483... 29 3.2
03_02_0635 + 9994327-9994644,9995510-9995706,9995806-9995941,999... 29 3.2
12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104 29 5.6
07_01_0927 - 7784564-7784656,7785182-7785225,7785946-7785970,778... 29 5.6
07_01_0689 - 5218920-5220107 29 5.6
03_02_0364 - 7813681-7814154 29 5.6
12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518 28 9.8
04_03_0264 - 13619329-13621708,13621742-13621830 28 9.8
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 31.5 bits (68), Expect = 0.79
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -3
Query: 713 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTGEE 603
C++ +S CVDA + RG CK G + +P + G E
Sbjct: 273 CVSSNSYCVDATNGRGYRCKCS-DGYKGNPYITDGCE 308
>04_03_0625 + 18126856-18127444,18127561-18127725,18127827-18127834
Length = 253
Score = 30.7 bits (66), Expect = 1.4
Identities = 17/49 (34%), Positives = 23/49 (46%)
Frame = -3
Query: 713 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTGEEXXXXXXXXXVYH 567
CI+ +SVCV++ S G C G Q +P LL G + YH
Sbjct: 161 CISSNSVCVNSSSGPGYICNC-THGYQGNPYLLHGCQDIDECEEHENYH 208
>12_02_0875 -
23920023-23920967,23921045-23921599,23921678-23922083,
23922175-23922452
Length = 727
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 56 RLASGCKHVQSTPAAATAQNVICKARNGY 142
RL+ G K +Q T AAATA V+ R+G+
Sbjct: 466 RLSRGHKSMQDTTAAATAAAVVASQRHGH 494
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 713 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTG 609
C++ DS CVD+ + G C AG + +P LL G
Sbjct: 263 CVSRDSECVDSRNGPGYLCNCS-AGFEGNPYLLDG 296
>09_04_0563 +
18546967-18547407,18547503-18548007,18548271-18548314,
18548639-18548734,18548830-18549340,18549506-18549540
Length = 543
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 643 ATSVLHSTPRLDGASTQTESSAMQRKTQ 726
AT +L PR+DGAS+ S+A R+ Q
Sbjct: 190 ATGILQRFPRVDGASSSASSAADAREVQ 217
>03_02_0635 +
9994327-9994644,9995510-9995706,9995806-9995941,
9996019-9996270,9996356-9996588,9996695-9996812,
9996884-9997036,9997126-9997212,9997407-9997697
Length = 594
Score = 29.5 bits (63), Expect = 3.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +2
Query: 134 NGYYKTDANCDTYIECRDYQATNMICPDGLHFNPSVEWP 250
+G+YK + C Y++ D+ CPDG F+P + P
Sbjct: 428 HGFYKANGGCG-YVKKPDFMMQT--CPDGNVFDPKADLP 463
>12_02_1105 + 26128108-26129032,26129535-26129663,26129924-26131104
Length = 744
Score = 28.7 bits (61), Expect = 5.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 713 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTG 609
CI+ +S C+DA + G C+ G + +P LL G
Sbjct: 273 CISANSYCMDANNGPGYLCQCS-KGYEGNPYLLNG 306
>07_01_0927 -
7784564-7784656,7785182-7785225,7785946-7785970,
7786357-7786497,7786590-7786619,7786686-7786762,
7786816-7786855,7787055-7787122,7787782-7789864
Length = 866
Score = 28.7 bits (61), Expect = 5.6
Identities = 27/92 (29%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = -2
Query: 510 RFFSITGRYKVGPVTAAEVW---IEC*SRRAYHVESTTTYACSVLATIGGRSVRMFEDAI 340
RF G + P A VW I +RR + + +A +LA G + F +
Sbjct: 60 RFHDARGVFDERPTRTAPVWTLTISGCARRGRYADGMRAFA-EMLAE-GEATPNAF---V 114
Query: 339 LVRAIRCCLGRLDAPSSYTCHFNWITARNAGH 244
L +RCC G D S H W+ RN H
Sbjct: 115 LAAVVRCCAGMGDVESGKRVH-GWM-LRNGVH 144
>07_01_0689 - 5218920-5220107
Length = 395
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -3
Query: 704 LDSVCVDAPSSRGVECKT----DVAGQQSSPILLTG 609
L AP RGVEC T D+A +Q P+L+ G
Sbjct: 199 LSPATTSAPRDRGVECDTIAGFDLATEQWRPVLMDG 234
>03_02_0364 - 7813681-7814154
Length = 157
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 569 HIIQRIADSIQRSRGASETQDFSASQEGTRSAQSQRLKSGLNASPGGH 426
H+I IA + GA + S+ +G RS ++ + G +PGGH
Sbjct: 27 HLI--IALLLLAGSGAGAAPEISSRADGDRSLEADAVVQGREMNPGGH 72
>12_02_1103 + 26116614-26117607,26118060-26118242,26118344-26119518
Length = 783
Score = 27.9 bits (59), Expect = 9.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -3
Query: 713 CIALDSVCVDAPSSRGVECKTDVAGQQSSPILLTG 609
C++ +S CV A +S+G CK G + +P L G
Sbjct: 296 CVSSNSKCVQASNSQGYLCKCS-EGYEGNPYLPKG 329
>04_03_0264 - 13619329-13621708,13621742-13621830
Length = 822
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 364 ASPTNCGQYRTCVGGRAFDMVCP 432
A PT CG+Y C GG+ +CP
Sbjct: 304 AFPTVCGEYAICTGGQC---ICP 323
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,491,341
Number of Sequences: 37544
Number of extensions: 592293
Number of successful extensions: 1498
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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