Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0736
(793 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 23 3.3
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 23 4.3
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 22 5.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.5
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.5
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.5
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.5
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.5
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 7.5
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.5
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 7.5
AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alph... 21 9.9
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 23.0 bits (47), Expect = 3.3
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Frame = +1
Query: 391 RTCVGGRAFDMVCPPGL---AFNP 453
+TC+ GRAF ++ G AFNP
Sbjct: 299 KTCISGRAFQVLTWLGYSNSAFNP 322
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 22.6 bits (46), Expect = 4.3
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Frame = -2
Query: 432 RAYHVESTTTYACSVLATIGGRSVR--MFEDAILVRAIRCCLGRLD--APSSYTCH 277
R VE + Y C V ++GG SV + A L I +D P+++TC+
Sbjct: 275 REARVEDSGKYLCIVNNSVGGESVETVLTVTAPLGAEIEPSTQTIDFGRPATFTCN 330
Score = 22.6 bits (46), Expect = 4.3
Identities = 9/21 (42%), Positives = 11/21 (52%)
Frame = +3
Query: 429 PAGTSIQSRLQPL*LGRPCTF 491
P G I+ Q + GRP TF
Sbjct: 307 PLGAEIEPSTQTIDFGRPATF 327
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 22.2 bits (45), Expect = 5.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 241 PCVLIASMAVLGFTLPP 257
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 204 PCVLISSMALLGFTLPP 220
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 204 PCVLISSMALLGFTLPP 220
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 204 PCVLISSMALLGFTLPP 220
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 204 PCVLISSMALLGFTLPP 220
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 204 PCVLISSMALLGFTLPP 220
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 204 PCVLISSMALLGFTLPP 220
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 272 PCVLISSMALLGFTLPP 288
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +3
Query: 480 PCTFL*C*KILGFTCPP 530
PC + +LGFT PP
Sbjct: 272 PCVLISSMALLGFTLPP 288
>AM420631-1|CAM06631.1| 153|Apis mellifera bursicon subunit alpha
protein precursor protein.
Length = 153
Score = 21.4 bits (43), Expect = 9.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 622 IGLDCCPATSVLH 660
IG+D C AT V+H
Sbjct: 24 IGVDECQATPVIH 36
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 238,093
Number of Sequences: 438
Number of extensions: 5585
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -