Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0731
(710 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0485 - 8808139-8808618 43 2e-04
03_02_0484 + 8805053-8805538 43 3e-04
03_02_0483 - 8804021-8804485 43 3e-04
03_02_0478 + 8775892-8776377 42 6e-04
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 40 0.003
01_01_0229 - 1943473-1943922 39 0.003
01_01_0231 + 1951047-1951499 39 0.005
01_01_0227 + 1933247-1933699 37 0.018
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 34 0.13
05_03_0545 - 15244647-15245147,15245342-15245635 31 0.68
07_01_0989 + 8348706-8348882,8348988-8349028,8350071-8350120,835... 31 0.90
07_01_1127 + 10456895-10457388,10457488-10458112 29 3.6
09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786 29 4.8
09_03_0036 + 11772940-11773171,11774995-11775104 29 4.8
07_03_1444 - 26578007-26578117,26578370-26578474,26578971-265790... 29 4.8
04_01_0252 - 3329712-3331061 29 4.8
04_03_0212 + 12697854-12698549,12698655-12698930,12698991-126990... 28 6.4
03_01_0491 + 3720842-3720958,3721904-3723109 28 6.4
09_06_0021 - 20286454-20287035 28 8.4
>03_02_0485 - 8808139-8808618
Length = 159
Score = 43.2 bits (97), Expect = 2e-04
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +1
Query: 274 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 429
DV EE+ V+ DG I+ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 430 SVESRLSSNGVLSVIAPRKVP 492
+++ + NGVL+V P++ P
Sbjct: 128 QIKASM-ENGVLTVTVPKEEP 147
>03_02_0484 + 8805053-8805538
Length = 161
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +1
Query: 274 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 429
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 430 SVESRLSSNGVLSVIAPRKVP 492
+++ + NGVL+V P++ P
Sbjct: 130 QIKASM-ENGVLTVTVPKEEP 149
>03_02_0483 - 8804021-8804485
Length = 154
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Frame = +1
Query: 274 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 429
DV EE+ V+ DG ++ + G+ EEK D+ + R +F RR+ LPE E
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 430 SVESRLSSNGVLSVIAPRKVP 492
+++ + NGVL+V P++ P
Sbjct: 123 QIKASM-ENGVLTVTVPKEEP 142
>03_02_0478 + 8775892-8776377
Length = 161
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 8/79 (10%)
Frame = +1
Query: 274 DVQHFAPEEISVKTADGYIV-VEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 429
DV EE+ V+ DG I+ + G+ EEK DQ + R +F RR+ LP+ E
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 430 SVESRLSSNGVLSVIAPRK 486
+++ + NGVL+V P++
Sbjct: 130 QIKASM-ENGVLTVTVPKE 147
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 39.5 bits (88), Expect = 0.003
Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 274 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 429
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 430 SVESRLSSNGVLSVIAPR 483
V++ L NGVL+V P+
Sbjct: 119 QVKAGL-ENGVLTVTVPK 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 274 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 429
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 430 SVESRLSSNGVLSVIAPR 483
V++ + NGVL+V P+
Sbjct: 118 QVKASM-ENGVLTVTVPK 134
>01_01_0231 + 1951047-1951499
Length = 150
Score = 38.7 bits (86), Expect = 0.005
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Frame = +1
Query: 274 DVQHFAPEEISVKTADGYI-VVEGKH----EEKKDQHGYISR---QFTRRYALPEGCTAE 429
D+ EE+ V+ +G + V+ G+ E+K D+ + R QF RR+ LPE +
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 430 SVESRLSSNGVLSVIAPR 483
V++ + NGVL+V P+
Sbjct: 119 QVKAGM-ENGVLTVTVPK 135
>01_01_0227 + 1933247-1933699
Length = 150
Score = 36.7 bits (81), Expect = 0.018
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +1
Query: 334 VEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSNGVLSVIAPRK 486
V+GK++E+ S +F RR+ LP G + V + + NGVL+V P++
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPKE 136
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 33.9 bits (74), Expect = 0.13
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Frame = +1
Query: 262 QVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQ------HGYISRQ----FTRRYALP 411
++ D+ + EE+ V D +V+ G+H++++ + G+ + + R ALP
Sbjct: 145 RMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALP 204
Query: 412 EGCTAESVESRLSSNGVLSVIAPR 483
+ C V + L NGVL V P+
Sbjct: 205 DECDKSKVRAEL-KNGVLLVTVPK 227
>05_03_0545 - 15244647-15245147,15245342-15245635
Length = 264
Score = 31.5 bits (68), Expect = 0.68
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -2
Query: 349 RVCLQPRCSRPPF*QRFLPGRNAGR 275
R CLQPR SRPP ++F GR+ R
Sbjct: 221 RDCLQPRQSRPPHYRQFTRGRHPNR 245
>07_01_0989 +
8348706-8348882,8348988-8349028,8350071-8350120,
8350502-8350646,8351570-8351626,8352141-8352261,
8352436-8352945,8353242-8353289
Length = 382
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Frame = -2
Query: 574 SPLDWSFTSL-RTGPVWAIGILRHPPLLAAPSWVRLQTTHHLKTA------GTPQIQPYS 416
SPL S T++ RT PV +HP + P L L TA GTP +QP+
Sbjct: 276 SPLTSSQTTMARTNPVAPTAPPQHPRITQQPHSAPLLQPFPLPTASPSPPYGTPLLQPFP 335
Query: 415 PP 410
PP
Sbjct: 336 PP 337
>07_01_1127 + 10456895-10457388,10457488-10458112
Length = 372
Score = 29.1 bits (62), Expect = 3.6
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = -2
Query: 349 RVCLQPRCSRPPF*QRFLPGRNAGR 275
R CLQPR SRPP ++F R+ R
Sbjct: 329 RDCLQPRQSRPPHYRQFTRSRHPNR 353
>09_06_0356 - 22498300-22498350,22499251-22499425,22499543-22500786
Length = 489
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 296 KKSLLKRRTATSWLKANTRRRKISMVTYRVNS 391
KKS T TS K TRRRK+++V Y S
Sbjct: 16 KKSAAGELTTTSEKKKKTRRRKVAVVYYLCRS 47
>09_03_0036 + 11772940-11773171,11774995-11775104
Length = 113
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 294 GRNLC*NGGRLHRG*RQTRGEERSAWLH 377
G+NL G+ H G R+ RG+ER LH
Sbjct: 21 GQNLMDRRGKRHEGRRERRGKERGRNLH 48
>07_03_1444 -
26578007-26578117,26578370-26578474,26578971-26579030,
26579122-26579233,26579390-26579716,26579814-26579860
Length = 253
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 497 QWRVTQDSDRPNRTRAQGGEGPIQRRQGLSRQQCQHKCSILITYI 631
QWR S R +QGG G + +GL R +C+ L++++
Sbjct: 31 QWRGVFRSVRMESGSSQGGRGALIVLEGLDRSGKSSQCARLLSFL 75
>04_01_0252 - 3329712-3331061
Length = 449
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -2
Query: 349 RVCLQPRCSRPPF*QRFLPGRNAGR 275
R CLQPR +RPP ++F R++ R
Sbjct: 406 RDCLQPRQNRPPHYRQFTRSRHSNR 430
>04_03_0212 +
12697854-12698549,12698655-12698930,12698991-12699038,
12699659-12699715,12700965-12701163,12702267-12702373,
12702586-12702759,12702844-12703083,12703638-12703693,
12704499-12704622
Length = 658
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -2
Query: 688 NIYCNLKSNQSLKQRSRNGY 629
++YCNLKS QS++ R+ N Y
Sbjct: 404 HMYCNLKSYQSIQLRTLNPY 423
>03_01_0491 + 3720842-3720958,3721904-3723109
Length = 440
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -2
Query: 178 AHKGAGCSTEKIFRSQPQAEMLIHEATRTLNFV 80
A G GC K+F S+ +A+ H A +L F+
Sbjct: 391 ADHGRGCKLAKVFESKDEAKASTHTAISSLPFM 423
>09_06_0021 - 20286454-20287035
Length = 193
Score = 27.9 bits (59), Expect = 8.4
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 349 EEKKDQHGYISRQFTRRYALPEGCTAESVE-SRLSSNGVLSVIAPRKVP 492
E D +GY + T R ALPEG VE R NG + +A VP
Sbjct: 55 ESGGDCNGYPYWKETLRVALPEGARWLDVEICRRRPNGQVEAVAAASVP 103
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,706,471
Number of Sequences: 37544
Number of extensions: 499692
Number of successful extensions: 1468
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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