Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0731
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 68 7e-12
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 67 1e-11
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 1e-10
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 64 1e-10
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 62 3e-10
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 3e-10
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 62 4e-10
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 61 8e-10
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 41 9e-04
SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06) 33 0.30
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 31 0.70
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 3.7
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20) 28 8.6
SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8) 28 8.6
SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 68.1 bits (159), Expect = 7e-12
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 KFQV-NLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAES 432
KFQ+ LDV+ F PEEI+ K +G I V G + ++ G+ S++F R Y LPEG S
Sbjct: 5 KFQIATLDVREFKPEEITCKVENGKIKVSGLQRHESEE-GFDSKEFRRCYNLPEGVDESS 63
Query: 433 VESRLSSNGVLSVIAPRKVPPA 498
+ +R++ +G+L V A +K PPA
Sbjct: 64 ISTRIAEDGMLHVEALKKSPPA 85
Score = 50.4 bits (115), Expect = 1e-06
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 1/78 (1%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEGCTAES 432
KF + LDV F PEE+ VK + V + E ++HG+ + RQF R + LP ++
Sbjct: 99 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDT 156
Query: 433 VESRLSSNGVLSVIAPRK 486
+ RL +GVL + A ++
Sbjct: 157 LVPRLGKDGVLYIEADKR 174
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 67.3 bits (157), Expect = 1e-11
Identities = 31/78 (39%), Positives = 50/78 (64%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+++ PEEIS+K G I ++GKH+ + +HGY + +F R Y LP+G +V SR++
Sbjct: 45 LDVKNYRPEEISLKVEHGRIKIDGKHKSE-GEHGYETSEFHRSYNLPDGVDVSTVSSRIT 103
Query: 451 SNGVLSVIAPRKVPPAVE 504
+G+L + A + P E
Sbjct: 104 GDGLLHIEALKAEPQETE 121
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/74 (39%), Positives = 50/74 (67%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG A +V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 451 SNGVLSVIAPRKVP 492
++G L + A + +P
Sbjct: 71 NHGQLHIEAMKALP 84
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 435
KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 98 KFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSL 156
Query: 436 ESRLSSNGVLSVIAPRKVPPAV 501
+RL G L A ++ PA+
Sbjct: 157 TTRLDKEGKLHFEAKKRNAPAL 178
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 64.1 bits (149), Expect = 1e-10
Identities = 29/74 (39%), Positives = 50/74 (67%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+ + PEEIS K +G++ V+G+H + G+ ++F R +ALPEG A +V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRIS 70
Query: 451 SNGVLSVIAPRKVP 492
++G L + A + +P
Sbjct: 71 NHGQLHIEAMKALP 84
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 435
KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 98 KFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSL 156
Query: 436 ESRLSSNGVLSVIAPRKVPPAV 501
+RL G L A ++ PA+
Sbjct: 157 TTRLDKEGKLHFEAKKRNAPAL 178
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A +V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 451 SNGVLSVIAPRKVP 492
++G L + A + +P
Sbjct: 71 NHGQLHIEAMKALP 84
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A +V++R+S
Sbjct: 246 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 304
Query: 451 SNGVLSVIAPRKVP 492
++G L + A + +P
Sbjct: 305 NHGQLHIEAMKALP 318
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 435
KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 98 KFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSL 156
Query: 436 ESRLSSNGVLSVIAPRKVPPAV 501
+RL G L A ++ PA+
Sbjct: 157 TTRLDKEGKLHFEAKKRNAPAL 178
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 435
KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 332 KFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSL 390
Query: 436 ESRLSSNGVLSVIAPRKVPPAV 501
+RL G L A ++ PA+
Sbjct: 391 TTRLDKEGKLHFEAKKRNAPAL 412
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/74 (37%), Positives = 49/74 (66%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+ + PEEIS K +G++ V+G+H + G+ ++F R + LPEG A +V++R+S
Sbjct: 12 LDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 70
Query: 451 SNGVLSVIAPRKVP 492
++G L + A + +P
Sbjct: 71 NHGQLHIEAMKALP 84
Score = 49.2 bits (112), Expect = 3e-06
Identities = 25/82 (30%), Positives = 42/82 (51%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 435
KF + +DV F P+ I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 98 KFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDSL 156
Query: 436 ESRLSSNGVLSVIAPRKVPPAV 501
+RL G L A ++ PA+
Sbjct: 157 TTRLDKEGKLHFEAKKRNAPAL 178
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 62.1 bits (144), Expect = 4e-10
Identities = 29/74 (39%), Positives = 48/74 (64%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+ + PEEIS K +G + V+G+H + + G+ ++F R + LPEG E+V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 451 SNGVLSVIAPRKVP 492
++G L + A + +P
Sbjct: 71 NHGHLHIEARKALP 84
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/82 (32%), Positives = 42/82 (51%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 435
KF + +DV F PE I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 97 KFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVDMDSL 155
Query: 436 ESRLSSNGVLSVIAPRKVPPAV 501
+RL G L A + V PA+
Sbjct: 156 TTRLDKEGKLHFEAKKSVAPAL 177
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 61.3 bits (142), Expect = 8e-10
Identities = 32/89 (35%), Positives = 53/89 (59%)
Frame = +1
Query: 271 LDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLS 450
LDV+ + PEEIS K +G + V+G+H + G+ ++F R + LPEG A +V++R+S
Sbjct: 13 LDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRIS 71
Query: 451 SNGVLSVIAPRKVPPAVEGDARFRSPKPD 537
++G L + A + +P E D + K D
Sbjct: 72 NHGQLHIEAMKALP---EPDGAKKESKDD 97
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/82 (31%), Positives = 43/82 (52%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESV 435
KF + +DV+ F PE I V+ ++V HE + + H Y + F R++ LP +S+
Sbjct: 98 KFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVDMDSL 156
Query: 436 ESRLSSNGVLSVIAPRKVPPAV 501
+RL G L A ++ PA+
Sbjct: 157 TTRLDKEGKLHFEAKKRNAPAL 178
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 41.1 bits (92), Expect = 9e-04
Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 256 KFQVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYI-SRQFTRRYALPE 414
KF + LDV F PEE+ VK + V + E ++HG+ +RQF R + LP+
Sbjct: 27 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_6186| Best HMM Match : HSP20 (HMM E-Value=1.1e-06)
Length = 237
Score = 32.7 bits (71), Expect = 0.30
Identities = 17/76 (22%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Frame = +1
Query: 262 QVNLDVQHFAPEEISVKTADGYIVVEGKHEEKKDQHGYIS-RQFTRRYALPEGCTAESVE 438
++ ++V+ FA +++S++ ++++G+ +K D G+ RQF R P+ +S++
Sbjct: 101 KLEMNVRGFAAKDVSLQVDGQDLIIKGEKMDKDD--GWCKMRQFCWRRRFPKSTDMKSIK 158
Query: 439 SRLSSNGVLSVIAPRK 486
+ L +L + A ++
Sbjct: 159 ATLKYGDILEIEAQKE 174
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 31.5 bits (68), Expect = 0.70
Identities = 11/22 (50%), Positives = 18/22 (81%)
Frame = +1
Query: 343 KHEEKKDQHGYISRQFTRRYAL 408
KHEE++D+HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 307 VKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPE 414
+++A GY+V G H K + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_57724| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 3804
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = +2
Query: 458 VCCL*SHPGRCRQQWRVTQDSDRPNR--TRAQGGEGPIQRRQGLSRQQCQHKC 610
VC L PGRCR + + + R R T GG G R SR+QCQ +C
Sbjct: 2121 VCSLPLRPGRCRARMVMWFYNKRTGRCQTFNYGGCGGNGNR-FRSRRQCQRRC 2172
>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 784
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -2
Query: 241 DAGAKVSSRGSKVTPRAVVFSAHKGAGCSTEKIFRSQPQ 125
D A V + S V+ FS H G+ CST + ++P+
Sbjct: 154 DVLAAVKTPVSPVSSNGTAFSEHGGSPCSTPTVSSAEPR 192
>SB_35198| Best HMM Match : rve (HMM E-Value=8.1e-20)
Length = 745
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = +2
Query: 401 TLCRRAVRLNLWSPGCLQMVC--------CL*SHPGRCRQQWRVTQDSDRP 529
T CR RL++W PG + + CL + P + ++ R T DRP
Sbjct: 432 TKCRERARLSVWWPGLSRSIAQKVASCEFCLVNQPTQRKEPLRTTPLPDRP 482
>SB_28108| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1558
Score = 27.9 bits (59), Expect = 8.6
Identities = 19/83 (22%), Positives = 32/83 (38%)
Frame = +1
Query: 280 QHFAPEEISVKTADGYIVVEGKHEEKKDQHGYISRQFTRRYALPEGCTAESVESRLSSNG 459
+H A S + V+ D SRQ R ++P G + +S+L +
Sbjct: 1074 KHKAIATASSAALRNLMAVKPTSSHATDNESVSSRQARRYRSMPAGTRTQEAQSKLRQSA 1133
Query: 460 VLSVIAPRKVPPAVEGDARFRSP 528
V +P P ++ + RSP
Sbjct: 1134 RDRVKSPGTQSPRMQQSPQARSP 1156
>SB_28182| Best HMM Match : RnaseH (HMM E-Value=1.8)
Length = 507
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Frame = +2
Query: 401 TLCRRAVRLNLWSPGCLQMVC--------CL*SHPGRCRQQWRVTQDSDRP 529
T CR RL++W PG + + CL + P + ++ R T DRP
Sbjct: 432 TKCRERARLSVWWPGLSRSIAQKVASCEFCLVNQPTQRKEPLRTTPLPDRP 482
>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = -3
Query: 489 HLPGCDYRQHTI*RQPGLHRFSRTALRQSVATSELTRYVTMLIFLLLVFAFN 334
H YR H + R+P H +R + + + +T L++ ++AFN
Sbjct: 204 HFERVPYRNHQVLREPARH-VTRFIALSYIGNPQKKKILTELLYFQYMYAFN 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,679,702
Number of Sequences: 59808
Number of extensions: 522357
Number of successful extensions: 1400
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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