Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0731
         (710 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.31 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 26.2 bits (55), Expect = 0.31
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +2

Query: 419  VRLNLWSPGCLQMVCCL*SHPGRCRQQWRVTQDSDRP 529
            + LN WS G   M+  +  H  + +Q+W    ++ +P
Sbjct: 1479 LHLNAWSDGGCPMIYFVVEHKKKNQQEWNQVSNNVKP 1515


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
 Frame = -3

Query: 576 CRRWIGPSPPCARVRFGRSES----CVTLHCWRHLP 481
           CR    P+   A  +    ES    C TLH W H P
Sbjct: 442 CRIHGSPATTAAPPQLPTEESVDALCNTLHHWHHCP 477



 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 418 SPPAKRSDE*IDAICN 371
           +PP   ++E +DA+CN
Sbjct: 453 APPQLPTEESVDALCN 468


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -3

Query: 540 RVRFGRS-ESCVTLHCWRHLPGCDYRQ 463
           R+ F  S ++   L  W+ LP C Y+Q
Sbjct: 244 RIHFTASRDAFYGLPLWKLLPTCAYKQ 270


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,770
Number of Sequences: 438
Number of extensions: 4020
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)