Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0730
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo... 94 2e-20
SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase Gpd2|Schi... 80 4e-16
SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|c... 29 0.57
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 3.1
SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit... 27 4.0
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo... 26 5.4
SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone oxidoreductase/ARE-... 26 7.1
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 26 7.1
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 25 9.4
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 9.4
>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 385
Score = 94.3 bits (224), Expect = 2e-20
Identities = 42/81 (51%), Positives = 59/81 (72%)
Frame = +2
Query: 260 HENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALS 439
HENVKYLPG + P NV+AVPDV E A+ AD+L+FVVPHQF+ +C ++G I+P A +S
Sbjct: 82 HENVKYLPGIECPPNVIAVPDVREVARRADILVFVVPHQFIERVCDQMVGLIRPGAVGIS 141
Query: 440 LIKGFDIAEGGGIDLISHIIT 502
IKG +++ G+ L S +I+
Sbjct: 142 CIKGVAVSK-EGVRLYSEVIS 161
Score = 72.9 bits (171), Expect = 5e-14
Identities = 41/99 (41%), Positives = 52/99 (52%), Gaps = 4/99 (4%)
Frame = +1
Query: 478 RSYITYYYKMLKIPCAVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRD----IIQTDY 645
R Y + L I C VL GAN+A+EVA E+FCETTIG + R+ + Y
Sbjct: 154 RLYSEVISEKLGIYCGVLSGANVANEVAREQFCETTIGFNPPNEVDIPREQIAAVFDRPY 213
Query: 646 FRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNTK 762
F + GALKN+VA+ GF DGL +G NTK
Sbjct: 214 FSVVSVDDVAGVALGGALKNVVAMAVGFADGLEWGGNTK 252
Score = 59.7 bits (138), Expect = 5e-10
Identities = 34/63 (53%), Positives = 43/63 (68%), Gaps = 7/63 (11%)
Frame = +3
Query: 90 QPKNKVCI--VGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEIIEGK----KLTEI 248
+PK ++ I VGSGNWG+AIAKI G NA A +F +V MWV+EE IE K KLTE+
Sbjct: 18 RPKKRLSIGVVGSGNWGTAIAKICGENARAHGHHFRSKVRMWVFEEEIEYKGEKRKLTEV 77
Query: 249 INK 257
N+
Sbjct: 78 FNE 80
>SPAC23D3.04c |gpd2||glycerol-3-phosphate dehydrogenase
Gpd2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 373
Score = 79.8 bits (188), Expect = 4e-16
Identities = 40/81 (49%), Positives = 53/81 (65%)
Frame = +2
Query: 257 THENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAAL 436
THENVKYL G K PSNV A PD+ + +D+L++V+PHQFV IC+ L G +K A A+
Sbjct: 83 THENVKYLKGIKCPSNVFANPDIRDVGSRSDILVWVLPHQFVVRICNQLKGCLKKDAVAI 142
Query: 437 SLIKGFDIAEGGGIDLISHII 499
S IKG + + + L S II
Sbjct: 143 SCIKGVSVTK-DRVRLFSDII 162
Score = 76.6 bits (180), Expect = 4e-15
Identities = 44/87 (50%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Frame = +1
Query: 520 CAVLMGANIASEVAEEKFCETTIG-CRDVMLAP-----LMRDIIQTDYFRXXXXXXXXXX 681
C VL GANIASEVA+EKFCETTIG + + P ++ + YFR
Sbjct: 170 CGVLSGANIASEVAQEKFCETTIGYLPNSSVNPRYTPKTIQALFNRPYFRVNIVEDVPGV 229
Query: 682 XICGALKNIVAVGAGFVDGLGYGDNTK 762
+ GALKNIVAV AG +DGL GDNTK
Sbjct: 230 ALGGALKNIVAVAAGIIDGLELGDNTK 256
Score = 55.2 bits (127), Expect = 1e-08
Identities = 32/55 (58%), Positives = 38/55 (69%), Gaps = 5/55 (9%)
Frame = +3
Query: 105 VCIVGSGNWGSAIAKIVGRNA-ASLSNFEDRVTMWVYEEII--EGKK--LTEIIN 254
V I+GSGNWG+AIAKI G NA A F +V MW+YEE I EGK+ LTE+ N
Sbjct: 27 VGIIGSGNWGTAIAKICGENAKAHPDIFHPQVHMWMYEEKIQHEGKECNLTEVFN 81
>SPAP8A3.03 |||ZIP zinc transporter 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 29.5 bits (63), Expect = 0.57
Identities = 19/82 (23%), Positives = 38/82 (46%)
Frame = -3
Query: 331 FNYIWNSNNIRRQFVARQVFNIFMSLLIISVNFFPSIISSYTHIVTLSSKFDRLAAFRPT 152
F+Y +N I F+ NIF +L++ +F S+++ + + S D PT
Sbjct: 131 FSYSSGTNGILATFLTAIPPNIF--ILLVPKSFDTSMLNLFVAVSAGSLLGDVFLQLLPT 188
Query: 151 IFAIAEPQFPDPTMQTLFFGCL 86
+++ FP ++ ++ G L
Sbjct: 189 VYSTNGGDFPASSVYSILIGAL 210
>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 531
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = +2
Query: 374 QFVRTICSTLLGKIKPTAAALSLIKGFDIAE 466
+ +R IC T+ G ++ + + L KGF++ E
Sbjct: 315 ELIRFICLTINGNLQISGQTVDLEKGFEVIE 345
>SPAC1952.12c |csn71|csn7a, csn7|COP9/signalosome complex subunit
7a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 205
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Frame = -3
Query: 514 FLASCNNM*YKIDATTFGYIKSLNQ--RQSS---CSWLYFSKQSRADSSD 380
F+ C+N+ +++DA T KS + R SS ++ F K+ R D +D
Sbjct: 153 FIERCSNILFQLDAGTPSVSKSFKRASRMSSSDGIDYMVFDKRPRPDDTD 202
>SPBC336.14c |ppk26||serine/threonine protein kinase
Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 589
Score = 26.2 bits (55), Expect = 5.4
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -3
Query: 244 SVNFFPSIISSYTHIVTLSSKFDR 173
+++ PSIISSYT + L++K R
Sbjct: 206 TISALPSIISSYTSLAPLNTKLYR 229
>SPCC1442.16c |zta1|SPCC285.01c|NADPH quinone
oxidoreductase/ARE-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 329
Score = 25.8 bits (54), Expect = 7.1
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 8/67 (11%)
Frame = +2
Query: 275 YLPGHKLPSNVVAVPDVVEA-AKDADLLIFVVPH----QFVR---TICSTLLGKIKPTAA 430
Y+PG + V AV D VEA K D ++++ P Q+ T+ S + KI A
Sbjct: 59 YIPGKEAAGVVAAVGDKVEADFKVGDRVVYLTPFGAYAQYTNVPTTLVSKVSEKIPLKIA 118
Query: 431 ALSLIKG 451
+ +L++G
Sbjct: 119 SAALLQG 125
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -3
Query: 265 FMSLLIISVNFFPSIISSYTHIVTLSSKFDRLAAFRPTIFAIAEPQF 125
+ +++I+VN F + + YTH + + P ++AIAE +
Sbjct: 105 YSGIVLIAVNPFQRLPNLYTHEIVRAYSEKSRDELDPHLYAIAEDSY 151
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 590 PMVVSQNFSSATSDAILAPINTAQGIFSIL 501
P+V +QNF S+ + P+ + G S+L
Sbjct: 385 PLVATQNFEYKMSNILDKPVESVFGFISVL 414
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 638 VCMISRINGASITSRQPMVVSQNFSSATSDAILAPI 531
V S++ S TS+ +VS+N SATS +I PI
Sbjct: 175 VSSASKVASISNTSKPNPIVSENPISATSVSIEIPI 210
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,967
Number of Sequences: 5004
Number of extensions: 59214
Number of successful extensions: 191
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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