Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0730
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0) 65 7e-11
SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.) 62 5e-10
SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_14641| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.7
SB_6904| Best HMM Match : NifT (HMM E-Value=8.7) 29 5.7
SB_38574| Best HMM Match : WW (HMM E-Value=4.9) 28 9.9
>SB_50623| Best HMM Match : NAD_Gly3P_dh_C (HMM E-Value=0)
Length = 358
Score = 64.9 bits (151), Expect = 7e-11
Identities = 29/57 (50%), Positives = 43/57 (75%), Gaps = 1/57 (1%)
Frame = +3
Query: 87 KQPKNKVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIIN 254
++ + +V I+GSGNWGS IA+IVG+N ++ F + V M+ YEE+++G KLTEIIN
Sbjct: 3 EEGRKRVAIIGSGNWGSVIARIVGQNVKEHNDVFFEGVEMYTYEELVDGVKLTEIIN 59
Score = 62.5 bits (145), Expect = 4e-10
Identities = 29/61 (47%), Positives = 35/61 (57%)
Frame = +1
Query: 580 TTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALKNIVAVGAGFVDGLGYGDNT 759
T GCR PL++ + T YF+ +CGALKN VA+GAG VD LG GDNT
Sbjct: 205 TVKGCRVKEDGPLLKQLFHTHYFKINVVEDADTVELCGALKNAVAIGAGIVDALGMGDNT 264
Query: 760 K 762
K
Sbjct: 265 K 265
Score = 60.9 bits (141), Expect = 1e-09
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = +2
Query: 260 HENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQ 376
H NVKYLP +P N+ A PDVVE KDAD+L+FVVPHQ
Sbjct: 62 HMNVKYLPDFLIPENIHANPDVVECVKDADILVFVVPHQ 100
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/23 (69%), Positives = 18/23 (78%)
Frame = +1
Query: 523 AVLMGANIASEVAEEKFCETTIG 591
+VLMGAN+A EVA E F E TIG
Sbjct: 126 SVLMGANLAKEVARELFGEATIG 148
>SB_49139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 772
Score = 62.1 bits (144), Expect = 5e-10
Identities = 27/52 (51%), Positives = 40/52 (76%), Gaps = 1/52 (1%)
Frame = +3
Query: 102 KVCIVGSGNWGSAIAKIVGRNAASLSN-FEDRVTMWVYEEIIEGKKLTEIIN 254
KV ++GSGNWG+AIA+I+G N + F ++V M+VY+ +I G+KL+EIIN
Sbjct: 229 KVTVLGSGNWGTAIARIIGDNVRKKPHLFHNKVQMYVYDSLINGRKLSEIIN 280
Score = 44.4 bits (100), Expect = 1e-04
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +1
Query: 523 AVLMGANIASEVAEEKFCETTIGCRDVMLAPLMRDIIQTDYFRXXXXXXXXXXXICGALK 702
+V+MGAN+A EVA+ F ETTIG R + ++++ YF+ CGA+K
Sbjct: 348 SVMMGANLADEVAKGFFSETTIGSRLEEHGYIFKELLNQPYFKVNVVKDVETVEFCGAVK 407
Score = 35.9 bits (79), Expect = 0.037
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = +2
Query: 260 HENVKYLPGHKLPSNVVAVPDVVEAAKDADLLIFVVPHQFVRTICSTLLGKIKPTAAALS 439
HENVK LPG K+P NV F+ ++C + IKP A+S
Sbjct: 283 HENVKDLPGFKIPPNV-----------------------FLDSVCQKIKSSIKPDVLAIS 319
Query: 440 LIKGFDIAEGGGIDLISHII 499
LIKG D + G+ L+S+ I
Sbjct: 320 LIKGLDHRK-KGLHLVSNQI 338
>SB_37159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 592 NQWSFRRIFPQQPPMQYWLPLIQHREF 512
NQ F + P P +YW P+I R F
Sbjct: 408 NQRPFTLVVPDLQPRKYWWPIINSRAF 434
>SB_14641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 432
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = -3
Query: 316 NSNNIRRQFVARQVFNIFMSLLIISVNFFPSIISSYTHIVTLSSKFDRL-AAFRPTI-FA 143
+++ R ++A + +F L+ + + SSYTH++ L + + AFR TI
Sbjct: 271 SADKASRLYIASGMATVFARLVAGRICDLSPLASSYTHLIILIACYGLADGAFRTTINIL 330
Query: 142 IAEPQFPDPTMQTLFFG 92
+ PDP +G
Sbjct: 331 FMQTAKPDPVKVASAYG 347
>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.7 bits (61), Expect = 5.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 611 ASITSRQPMVVSQNFSSATSDAILAPINTAQGIFS 507
ASIT+ ++ + + ATSD + NT+QG FS
Sbjct: 245 ASITTANESSMATSSTMATSDVVSMATNTSQGSFS 279
>SB_6904| Best HMM Match : NifT (HMM E-Value=8.7)
Length = 408
Score = 28.7 bits (61), Expect = 5.7
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 592 NQWSFRRIFPQQPPMQYWLPLIQHREF 512
NQ F + P P +YW P+I R F
Sbjct: 302 NQRPFTIVIPNLQPRRYWWPIINSRAF 328
>SB_38574| Best HMM Match : WW (HMM E-Value=4.9)
Length = 256
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +2
Query: 371 HQFVRTICSTLLGKIKPTAAALSLIKGFDIAEGGGIDLIS 490
H+ C + +IKP +IKGF I G +L S
Sbjct: 191 HERRNIACQRFVSRIKPENPLFPIIKGFHITHDSGYNLRS 230
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,769,745
Number of Sequences: 59808
Number of extensions: 434433
Number of successful extensions: 1062
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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