Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0728
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0103 + 1082077-1082167,1083037-1085477 131 5e-31
02_04_0017 + 18937774-18937864,18938505-18940945 131 5e-31
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 131 5e-31
01_06_0662 + 30987187-30987277,30987825-30990214 130 2e-30
03_05_0511 + 25056018-25059107 95 7e-20
02_04_0148 - 20198407-20201424 92 4e-19
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 84 1e-16
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 66 3e-11
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 56 2e-08
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 43 2e-04
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 32 0.58
01_03_0200 + 13744735-13745037,13745071-13745610,13745704-137458... 29 4.1
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 29 5.4
03_02_0044 - 5245204-5245538,5245946-5246093,5246182-5247395,524... 28 7.2
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 28 9.5
07_01_0244 + 1786009-1788048 28 9.5
02_01_0401 + 2927581-2927669,2927795-2927921,2928354-2928437,292... 28 9.5
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 131 bits (317), Expect = 5e-31
Identities = 54/86 (62%), Positives = 72/86 (83%)
Frame = +2
Query: 2 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 181
+YVSKM+P SDKGRF+AFGRVFSG+V TG K RIMGPN+ PG+K+DLY K++QRT++ MG
Sbjct: 378 LYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGQKKDLYVKSVQRTVIWMG 437
Query: 182 RYVEAIEDVPSGNICGLVGVDQFLAR 259
+ E++EDVP GN +VG+DQF+ +
Sbjct: 438 KKQESVEDVPCGNTVAMVGLDQFITK 463
Score = 126 bits (304), Expect = 2e-29
Identities = 63/90 (70%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 LSKTGTITTFKNAHN--MKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 423
++K T+T K A ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 461 ITKNATLTNEKEADACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 520
Query: 424 INEESGEHIVAGAGELHLEICLKDLEEDLL 513
EESGEHI+AGAGELHLEICLKDL+ED +
Sbjct: 521 TIEESGEHIIAGAGELHLEICLKDLQEDFM 550
Score = 97.9 bits (233), Expect = 8e-21
Identities = 44/82 (53%), Positives = 62/82 (75%)
Frame = +3
Query: 531 SDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRA 710
S PVVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R+
Sbjct: 558 SPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRS 617
Query: 711 RYLTEKYEYDVTEARKICALAP 776
+ L+E++ +D A+KI P
Sbjct: 618 KILSEEFGWDKDLAKKIWCFGP 639
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 131 bits (317), Expect = 5e-31
Identities = 54/86 (62%), Positives = 72/86 (83%)
Frame = +2
Query: 2 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 181
+YVSKM+P SDKGRF+AFGRVFSG+V TG K RIMGPN+ PG+K+DLY K++QRT++ MG
Sbjct: 378 LYVSKMIPASDKGRFFAFGRVFSGRVATGMKVRIMGPNYVPGQKKDLYVKSVQRTVIWMG 437
Query: 182 RYVEAIEDVPSGNICGLVGVDQFLAR 259
+ E++EDVP GN +VG+DQF+ +
Sbjct: 438 KKQESVEDVPCGNTVAMVGLDQFITK 463
Score = 126 bits (303), Expect = 3e-29
Identities = 63/90 (70%), Positives = 74/90 (82%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 LSKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 423
++K T+T K +A ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 461 ITKNATLTNEKESDACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 520
Query: 424 INEESGEHIVAGAGELHLEICLKDLEEDLL 513
EESGEHI+AGAGELHLEICLKDL+ED +
Sbjct: 521 TIEESGEHIIAGAGELHLEICLKDLQEDFM 550
Score = 97.9 bits (233), Expect = 8e-21
Identities = 44/82 (53%), Positives = 62/82 (75%)
Frame = +3
Query: 531 SDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRA 710
S PVVS+RETV E+S + +SKSPNKHNRL+M+A+P+ +GL E ID+GR+ PRDD K R+
Sbjct: 558 SPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRS 617
Query: 711 RYLTEKYEYDVTEARKICALAP 776
+ L+E++ +D A+KI P
Sbjct: 618 KILSEEFGWDKDLAKKIWCFGP 639
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 131 bits (317), Expect = 5e-31
Identities = 55/86 (63%), Positives = 71/86 (82%)
Frame = +2
Query: 2 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 181
+YVSKM+P SDKGRF+AFGRVFSG V TG K RIMGPNF PG+K+DLY KT+QRT++ MG
Sbjct: 380 VYVSKMIPASDKGRFFAFGRVFSGTVATGNKVRIMGPNFVPGEKKDLYVKTVQRTVIWMG 439
Query: 182 RYVEAIEDVPSGNICGLVGVDQFLAR 259
+ E+++DVP GN +VG+DQF+ +
Sbjct: 440 KKQESVDDVPCGNTVAMVGLDQFITK 465
Score = 123 bits (296), Expect = 2e-28
Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 LSKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 423
++K T+T K +AH +K MKFSVSPVVR +V KN ++LPKLVEGLKRLAKSDP+V C
Sbjct: 463 ITKNATLTDEKAVDAHPIKAMKFSVSPVVRKSVACKNASELPKLVEGLKRLAKSDPLVVC 522
Query: 424 INEESGEHIVAGAGELHLEICLKDLEEDLL 513
EESGEH++AG G+LHLEIC+KDL+ED +
Sbjct: 523 TIEESGEHVIAGVGQLHLEICIKDLQEDFM 552
Score = 78.2 bits (184), Expect = 7e-15
Identities = 38/88 (43%), Positives = 59/88 (67%), Gaps = 8/88 (9%)
Frame = +3
Query: 537 PVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPM-PDGLPED-------IDEGRVNPRD 692
P+++YRETV + S + +SKSPNKHNRL+M+A+P+ + L +D ID+ R+ P+D
Sbjct: 562 PIITYRETVTKNSCRTVMSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKD 621
Query: 693 DFKTRARYLTEKYEYDVTEARKICALAP 776
D K R + L+E++ +D A+KI A P
Sbjct: 622 DIKERGKILSEEFGWDKDLAKKIWAFGP 649
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 130 bits (313), Expect = 2e-30
Identities = 54/86 (62%), Positives = 70/86 (81%)
Frame = +2
Query: 2 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 181
+YVSKM+P SDKGRFYAFGRVFSG+V TG K RIMGPN+ PG+K+DLY K +QRT++ MG
Sbjct: 374 LYVSKMIPASDKGRFYAFGRVFSGRVATGMKVRIMGPNYAPGQKKDLYVKNVQRTVIWMG 433
Query: 182 RYVEAIEDVPSGNICGLVGVDQFLAR 259
+ E++E VP GN +VG+DQF+ +
Sbjct: 434 KKQESVEGVPCGNTVAMVGLDQFITK 459
Score = 127 bits (306), Expect = 1e-29
Identities = 64/90 (71%), Positives = 74/90 (82%), Gaps = 2/90 (2%)
Frame = +1
Query: 250 LSKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 423
++K T+T K +A +K MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 457 ITKNATLTNEKEVDACPIKAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLC 516
Query: 424 INEESGEHIVAGAGELHLEICLKDLEEDLL 513
EESGEHI+AGAGELHLEICLKDL+ED +
Sbjct: 517 TVEESGEHIIAGAGELHLEICLKDLQEDFM 546
Score = 103 bits (248), Expect = 1e-22
Identities = 48/85 (56%), Positives = 64/85 (75%)
Frame = +3
Query: 522 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 701
I S PVVS+RETV E+S + +SKSPNKHNRL+M+A+PM +GLPE IDEGR+ PRDD K
Sbjct: 551 ITVSPPVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPK 610
Query: 702 TRARYLTEKYEYDVTEARKICALAP 776
R++ L+E++ +D A+KI P
Sbjct: 611 VRSKILSEEFGWDKDLAKKIWCFGP 635
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 94.7 bits (225), Expect = 7e-20
Identities = 43/83 (51%), Positives = 59/83 (71%)
Frame = +1
Query: 256 KTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEE 435
K+ T+++ KN M F VSP+++VA+EP NPADL LV+GLK L ++DP V+ +
Sbjct: 514 KSATLSSTKNCWPFSSMMFQVSPMLKVAIEPSNPADLGALVKGLKLLNRADPFVEYTVSQ 573
Query: 436 SGEHIVAGAGELHLEICLKDLEE 504
GEH++A AGE+HLE C KDLEE
Sbjct: 574 RGEHVLAAAGEIHLERCKKDLEE 596
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +2
Query: 44 FYAFGRVFSGKVVTGQKARIMGPNFTPGKKE----DLYEKTIQRTILMMGRYVEAIEDVP 211
F AF RVF G + GQK ++ P + P K E + E +Q M+G+ + + V
Sbjct: 439 FMAFARVFCGVLRAGQKVFVLSPLYDPMKGEAMQKHVQEVELQYLYEMLGQGLRPVSSVC 498
Query: 212 SGNICGLVGVDQFLAR 259
+GN+ + G+ + +
Sbjct: 499 AGNVVAIQGLGHHILK 514
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 92.3 bits (219), Expect = 4e-19
Identities = 40/83 (48%), Positives = 59/83 (71%)
Frame = +1
Query: 256 KTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEE 435
K T+++ KN M F VSP+++VA+EP NP+DL LV+GLK L ++DP ++ E
Sbjct: 494 KNATLSSTKNCQPFSGMMFQVSPMLKVAIEPSNPSDLGALVKGLKLLNQADPFIEYTVSE 553
Query: 436 SGEHIVAGAGELHLEICLKDLEE 504
GEH++A AGE+HLE C+K+L+E
Sbjct: 554 RGEHVLAAAGEIHLEHCIKNLQE 576
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 84.2 bits (199), Expect = 1e-16
Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Frame = +1
Query: 250 LSKTGTITTFK---NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ 420
+ KT TI K + + + ++F+ PVV++A EP NP++LPK+VEGL++++KS P+
Sbjct: 583 IMKTATICPMKMDEDVYIFRPLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAV 642
Query: 421 CINEESGEHIVAGAGELHLEICLKDLEE 504
EESGEH + G GEL+L+ +KDL E
Sbjct: 643 TKVEESGEHTILGTGELYLDSIMKDLRE 670
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/87 (37%), Positives = 53/87 (60%)
Frame = +3
Query: 516 IPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDD 695
+ +K +DPVV++ ETV + S C +++PNK N++ M A+P+ GL EDI+ G V+
Sbjct: 675 VEVKVADPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSR 734
Query: 696 FKTRARYLTEKYEYDVTEARKICALAP 776
K + ++Y++DV AR I A P
Sbjct: 735 QKEITDFFRQRYQWDVLAARSIWAFGP 761
Score = 63.3 bits (147), Expect = 2e-10
Identities = 30/79 (37%), Positives = 46/79 (58%)
Frame = +2
Query: 8 VSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRY 187
V+K+ P SD F AFGRV+SG + TGQ R++G ++P +ED+ K + + + RY
Sbjct: 502 VTKLYPKSDCSVFDAFGRVYSGTIQTGQTVRVLGEGYSPDDEEDMTVKEVTKLWVYQARY 561
Query: 188 VEAIEDVPSGNICGLVGVD 244
I P+G+ + GVD
Sbjct: 562 RVPISKAPAGSWVLIEGVD 580
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 66.1 bits (154), Expect = 3e-11
Identities = 30/76 (39%), Positives = 48/76 (63%)
Frame = +2
Query: 2 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 181
+YVSKM KGR++A GRVFSGKV +G + + P++ G+++DLY K I+ +++ +G
Sbjct: 557 LYVSKMTLALGKGRYFALGRVFSGKVTSGMNVQFLSPSYGIGERKDLYIKCIKSSLIWIG 616
Query: 182 RYVEAIEDVPSGNICG 229
E +E +I G
Sbjct: 617 DKRELVEGSSCSSIPG 632
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 56.4 bits (130), Expect = 2e-08
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESGEHIVAGAGELHLEICLKDL 498
PV++VA+EPK AD K+ GL +LA+ DP +EE+ + ++ G GELHL+I + L
Sbjct: 457 PVIKVAIEPKTKADADKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRL 516
Query: 499 EED 507
+ +
Sbjct: 517 KRE 519
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Frame = +1
Query: 322 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 498
PV+ +AV P + + + L R K DP + ++ ESGE I++G GELHL+I ++ +
Sbjct: 477 PVMSLAVSPISKDSGGQFSKALNRFQKEDPTFRVGLDPESGETIISGMGELHLDIYVERI 536
Query: 499 EED 507
+
Sbjct: 537 RRE 539
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -2
Query: 464 PAPATMCSPDSSLIHCTMGSDLARRLRPSTSLGRSAGFLGSTATRTT 324
P+P+ D S C GS + + P+T+ AG S T +T
Sbjct: 342 PSPSEAIGTDGSSTSCGTGSSVTNAIAPATTTSTFAGLFASVTTSST 388
>01_03_0200 +
13744735-13745037,13745071-13745610,13745704-13745862,
13748992-13749123,13749282-13749472,13749541-13749792,
13750248-13750323,13750411-13750602,13750688-13750689,
13753230-13753287,13753736-13754941
Length = 1036
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Frame = +3
Query: 87 DKKLASWDQTL---HLERKRTCMRRLSSVQSL*WDVMLKLLRMCPLVTSVVLLESISS*Q 257
DK W TL ++++ +T + + SL WD +K + + L+ +++
Sbjct: 11 DKSWRGWKNTLNTQYVKKGKTPFKTYGKITSLQWDEFVKFKTLPEEMAKSKLMSNLAKRN 70
Query: 258 DWYH 269
W+H
Sbjct: 71 KWHH 74
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 570 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPE 659
E + LCL PN+H + + A+ +P LPE
Sbjct: 42 EKENLCLYGFPNEHWEVNLPAEEVPPELPE 71
>03_02_0044 -
5245204-5245538,5245946-5246093,5246182-5247395,
5247730-5248003,5248141-5248293
Length = 707
Score = 28.3 bits (60), Expect = 7.2
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = -3
Query: 595 FERQSWSDSSATVSRYDTTGSDFLIGMQAGPPQDP*D-RSQDGVLQHQR 452
FE S S Y TGS IG + P D + R+ G L+HQR
Sbjct: 16 FEEMPRSPESLATRDYSATGSSSRIGNRESTPDDNQEARALLGRLEHQR 64
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 27.9 bits (59), Expect = 9.5
Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Frame = +1
Query: 283 NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMV--------QCINEES 438
NA + + +VSP ++ V+P P LV+ L + DP++ + +E
Sbjct: 57 NAMQVDGLLKNVSPTTKIVVKPNEELKSPFLVKRHLFLKRPDPIILDELYSLTTKVTDEE 116
Query: 439 GEHIVAGAGELHLEICLKDLEEDL 510
V +G L + + L D++E +
Sbjct: 117 SRQSVWVSGNLPINLKLVDIQETI 140
>07_01_0244 + 1786009-1788048
Length = 679
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -2
Query: 644 RHGLSLHEQTVVLVGRL*ETELVRFLSY 561
RHG++ ++++GRL LVR L Y
Sbjct: 397 RHGMTQFTAEIIILGRLRHRNLVRLLGY 424
>02_01_0401 +
2927581-2927669,2927795-2927921,2928354-2928437,
2928546-2928662,2928754-2928945,2929031-2929234,
2929322-2929809,2930429-2930528,2930686-2930745,
2931007-2931126,2931407-2931751
Length = 641
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 202 LNSFNITSHHKDCTLDSLLIQVLFLSRCKVWSHDA-SFLSGNNLARE 65
LN F IT HK ++D VLF C ++S A S N+ +E
Sbjct: 493 LNKFKITEEHKKYSIDGTEPLVLFGLSCGMFSSPAVRIFSAANVRQE 539
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,774,003
Number of Sequences: 37544
Number of extensions: 499404
Number of successful extensions: 1294
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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