BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0728 (777 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 130 1e-30 At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 91 6e-19 At5g25230.1 68418.m02991 elongation factor Tu family protein tra... 82 5e-16 At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 80 1e-15 At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 80 1e-15 At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 58 5e-09 At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 43 2e-04 At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 43 2e-04 At2g47500.1 68415.m05929 kinesin motor protein-related 32 0.49 At5g26210.1 68418.m03119 PHD finger family protein contains Pfam... 30 2.0 At1g04650.1 68414.m00462 hypothetical protein 29 2.6 At1g67560.1 68414.m07697 lipoxygenase family protein similar to ... 29 3.4 At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose transporter-r... 29 4.5 At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein /... 29 4.5 At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose transporter-r... 28 6.0 At1g24050.1 68414.m03036 expressed protein 28 6.0 At2g41620.1 68415.m05143 nucleoporin interacting component famil... 28 7.9 >At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, putative similar to ELONGATION FACTOR 2 GB:O14460 from [Schizosaccharomyces pombe] Length = 843 Score = 130 bits (314), Expect = 1e-30 Identities = 54/86 (62%), Positives = 71/86 (82%) Frame = +2 Query: 2 MYVSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMG 181 +YVSKM+P SDKGRF+AFGRVF+GKV TG K RIMGPN+ PG+K+DLY K++QRT++ MG Sbjct: 378 LYVSKMIPASDKGRFFAFGRVFAGKVSTGMKVRIMGPNYIPGEKKDLYTKSVQRTVIWMG 437 Query: 182 RYVEAIEDVPSGNICGLVGVDQFLAR 259 + E +EDVP GN +VG+DQF+ + Sbjct: 438 KRQETVEDVPCGNTVAMVGLDQFITK 463 Score = 130 bits (313), Expect = 1e-30 Identities = 64/90 (71%), Positives = 75/90 (83%), Gaps = 2/90 (2%) Frame = +1 Query: 250 LSKTGTITTFK--NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC 423 ++K T+T K +AH ++ MKFSVSPVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C Sbjct: 461 ITKNATLTNEKEVDAHPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVVC 520 Query: 424 INEESGEHIVAGAGELHLEICLKDLEEDLL 513 EESGEHIVAGAGELHLEICLKDL++D + Sbjct: 521 TMEESGEHIVAGAGELHLEICLKDLQDDFM 550 Score = 104 bits (250), Expect = 6e-23 Identities = 48/85 (56%), Positives = 64/85 (75%) Frame = +3 Query: 522 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFK 701 I KSDPVVS+RETV + S + +SKSPNKHNRL+M+A+PM +GL E ID+GR+ PRDD K Sbjct: 555 IIKSDPVVSFRETVCDRSTRTVMSKSPNKHNRLYMEARPMEEGLAEAIDDGRIGPRDDPK 614 Query: 702 TRARYLTEKYEYDVTEARKICALAP 776 R++ L E++ +D A+KI A P Sbjct: 615 IRSKILAEEFGWDKDLAKKIWAFGP 639 >At3g22980.1 68416.m02898 elongation factor Tu family protein similar to eukaryotic translation elongation factor 2 GB:NP_001952 [Homo sapiens] Length = 1015 Score = 91.5 bits (217), Expect = 6e-19 Identities = 39/85 (45%), Positives = 62/85 (72%) Frame = +1 Query: 250 LSKTGTITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 429 +SK+ T+++ +N + M+F VSP +RVA+EP +PAD+ L++GL+ L ++DP V+ Sbjct: 513 ISKSATLSSTRNCWPLASMEFQVSPTLRVAIEPSDPADMSALMKGLRLLNRADPFVEITV 572 Query: 430 EESGEHIVAGAGELHLEICLKDLEE 504 GEH++A AGE+HLE C+KDL+E Sbjct: 573 SARGEHVLAAAGEVHLERCVKDLKE 597 Score = 41.5 bits (93), Expect = 6e-04 Identities = 21/76 (27%), Positives = 41/76 (53%), Gaps = 4/76 (5%) Frame = +2 Query: 44 FYAFGRVFSGKVVTGQKARIMGPNFTPGKKED----LYEKTIQRTILMMGRYVEAIEDVP 211 F AF R+FSG + GQ+ ++ + P K E + E + LMMG+ + + +V Sbjct: 440 FLAFARIFSGVLRAGQRVFVITALYDPLKGESSHKYIQEAELHSLYLMMGQGLTPVTEVK 499 Query: 212 SGNICGLVGVDQFLAR 259 +GN+ + G+ ++++ Sbjct: 500 AGNVVAIRGLGPYISK 515 >At5g25230.1 68418.m02991 elongation factor Tu family protein translation Elongation Factor 2, Schizosaccharomyces pombe, PIR:T39902 Length = 973 Score = 81.8 bits (193), Expect = 5e-16 Identities = 35/75 (46%), Positives = 54/75 (72%) Frame = +1 Query: 280 KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAG 459 ++ + + +KF+ PVV+ A EP NP++LPK+VEGL++++KS P+ EESGEH + G Sbjct: 572 EDVYIFRALKFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILG 631 Query: 460 AGELHLEICLKDLEE 504 GEL+L+ +KDL E Sbjct: 632 TGELYLDSIIKDLRE 646 Score = 71.7 bits (168), Expect = 5e-13 Identities = 35/87 (40%), Positives = 52/87 (59%) Frame = +3 Query: 516 IPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDD 695 + +K +DPVVS+ ETV E S C +++PNK N+L M A+P+ GL EDI+ G V+ + Sbjct: 651 VQVKVADPVVSFCETVVESSSMKCFAETPNKKNKLTMIAEPLDRGLAEDIENGVVSIDWN 710 Query: 696 FKTRARYLTEKYEYDVTEARKICALAP 776 + KY++D+ AR I A P Sbjct: 711 RVQLGDFFRTKYDWDLLAARSIWAFGP 737 Score = 61.7 bits (143), Expect = 5e-10 Identities = 28/79 (35%), Positives = 45/79 (56%) Frame = +2 Query: 8 VSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRY 187 V+K+ P SD F FGRV+SG++ TGQ R++G ++P +ED+ K + + + RY Sbjct: 478 VTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPEDEEDMTIKEVTKLWIYQARY 537 Query: 188 VEAIEDVPSGNICGLVGVD 244 + P G+ + GVD Sbjct: 538 RIPVSSAPPGSWVLIEGVD 556 >At1g06220.2 68414.m00656 elongation factor Tu family protein similar to Cryptosporidium parvum elongation factor-2 GB:U21667 GI:706974 from [Cryptosporidium parvum] Length = 987 Score = 80.2 bits (189), Expect = 1e-15 Identities = 34/75 (45%), Positives = 54/75 (72%) Frame = +1 Query: 280 KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAG 459 ++ + + ++F+ PVV+ A EP NP++LPK+VEGL++++KS P+ EESGEH + G Sbjct: 586 EDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILG 645 Query: 460 AGELHLEICLKDLEE 504 GEL+L+ +KDL E Sbjct: 646 TGELYLDSIMKDLRE 660 Score = 73.7 bits (173), Expect = 1e-13 Identities = 35/87 (40%), Positives = 53/87 (60%) Frame = +3 Query: 516 IPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDD 695 + +K +DPVVS+ ETV E S C +++PNK N++ M A+P+ GL EDI+ G V+ + Sbjct: 665 VEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWN 724 Query: 696 FKTRARYLTEKYEYDVTEARKICALAP 776 K + KY++D+ AR I A P Sbjct: 725 RKQLGDFFRTKYDWDLLAARSIWAFGP 751 Score = 61.7 bits (143), Expect = 5e-10 Identities = 28/79 (35%), Positives = 45/79 (56%) Frame = +2 Query: 8 VSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRY 187 V+K+ P SD F FGRV+SG++ TGQ R++G ++P +ED+ K + + + RY Sbjct: 492 VTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPEDEEDMTIKEVTKLWIYQARY 551 Query: 188 VEAIEDVPSGNICGLVGVD 244 + P G+ + GVD Sbjct: 552 RIPVSSAPPGSWVLIEGVD 570 >At1g06220.1 68414.m00655 elongation factor Tu family protein similar to Cryptosporidium parvum elongation factor-2 GB:U21667 GI:706974 from [Cryptosporidium parvum] Length = 987 Score = 80.2 bits (189), Expect = 1e-15 Identities = 34/75 (45%), Positives = 54/75 (72%) Frame = +1 Query: 280 KNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVAG 459 ++ + + ++F+ PVV+ A EP NP++LPK+VEGL++++KS P+ EESGEH + G Sbjct: 586 EDVYIFRALQFNTLPVVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILG 645 Query: 460 AGELHLEICLKDLEE 504 GEL+L+ +KDL E Sbjct: 646 TGELYLDSIMKDLRE 660 Score = 73.7 bits (173), Expect = 1e-13 Identities = 35/87 (40%), Positives = 53/87 (60%) Frame = +3 Query: 516 IPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDD 695 + +K +DPVVS+ ETV E S C +++PNK N++ M A+P+ GL EDI+ G V+ + Sbjct: 665 VEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVSIDWN 724 Query: 696 FKTRARYLTEKYEYDVTEARKICALAP 776 K + KY++D+ AR I A P Sbjct: 725 RKQLGDFFRTKYDWDLLAARSIWAFGP 751 Score = 61.7 bits (143), Expect = 5e-10 Identities = 28/79 (35%), Positives = 45/79 (56%) Frame = +2 Query: 8 VSKMVPTSDKGRFYAFGRVFSGKVVTGQKARIMGPNFTPGKKEDLYEKTIQRTILMMGRY 187 V+K+ P SD F FGRV+SG++ TGQ R++G ++P +ED+ K + + + RY Sbjct: 492 VTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPEDEEDMTIKEVTKLWIYQARY 551 Query: 188 VEAIEDVPSGNICGLVGVD 244 + P G+ + GVD Sbjct: 552 RIPVSSAPPGSWVLIEGVD 570 >At1g62750.1 68414.m07082 elongation factor Tu family protein similar to elongation factor G SP:P34811 [Glycine max (Soybean)] Length = 783 Score = 58.4 bits (135), Expect = 5e-09 Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%) Frame = +1 Query: 265 TITTFKNAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESG 441 T++ +N ++ M F PV++VA+EPK AD+ K+ GL +LA+ DP +EE Sbjct: 475 TLSDPENPVVLERMDFP-DPVIKVAIEPKTKADIDKMATGLIKLAQEDPSFHFSRDEEMN 533 Query: 442 EHIVAGAGELHLEICLKDLEED 507 + ++ G GELHLEI + L+ + Sbjct: 534 QTVIEGMGELHLEIIVDRLKRE 555 >At2g45030.1 68415.m05606 mitochondrial elongation factor, putative similar to SP|P25039 Elongation factor G 1, mitochondrial precursor (mEF-G-1) {Saccharomyces cerevisiae}; contains Pfam profiles PF00009: Elongation factor Tu GTP binding domain, PF03764: Elongation factor G domain IV, PF00679: Elongation factor G C-terminus Length = 754 Score = 43.2 bits (97), Expect = 2e-04 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = +1 Query: 322 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 498 PV+ +AV+P + + + L R K DP + ++ ESG+ I++G GELHL+I ++ + Sbjct: 461 PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERM 520 Query: 499 EED 507 + Sbjct: 521 RRE 523 >At1g45332.1 68414.m05195 mitochondrial elongation factor, putative similar to mitochondrial elongation factor GI:3917 from [Saccharomyces cerevisiae] Length = 754 Score = 43.2 bits (97), Expect = 2e-04 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = +1 Query: 322 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDL 498 PV+ +AV+P + + + L R K DP + ++ ESG+ I++G GELHL+I ++ + Sbjct: 461 PVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERM 520 Query: 499 EED 507 + Sbjct: 521 RRE 523 >At2g47500.1 68415.m05929 kinesin motor protein-related Length = 974 Score = 31.9 bits (69), Expect = 0.49 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%) Frame = +1 Query: 250 LSKTGTITTFK----NAHNMKVMKFSVSPVVRVAVEPKNPADLPKLVEGL 387 LS+T +I K N N S+S +VR + K P D+PKL+E L Sbjct: 204 LSRTSSINNEKAPSENDSNKLSSPSSLSTLVRAVLSDKKPEDVPKLIESL 253 >At5g26210.1 68418.m03119 PHD finger family protein contains Pfam domain, PF00628: PHD-finger Length = 255 Score = 29.9 bits (64), Expect = 2.0 Identities = 12/32 (37%), Positives = 19/32 (59%) Frame = +3 Query: 570 ESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDI 665 E + LCL PN+H + + A+ +P LPE + Sbjct: 44 EKENLCLYGHPNEHWEVNLPAEEVPPELPEPV 75 >At1g04650.1 68414.m00462 hypothetical protein Length = 936 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/45 (35%), Positives = 22/45 (48%) Frame = -3 Query: 232 KTTDVTRGHILNSFNITSHHKDCTLDSLLIQVLFLSRCKVWSHDA 98 KTT G +LN+ +T + LDSL + CK SHD+ Sbjct: 334 KTTVDLLGALLNAAELTQEFRLTLLDSLFVDEFSNQICKKQSHDS 378 >At1g67560.1 68414.m07697 lipoxygenase family protein similar to 13-lipoxygenase GB:CAA65269 [Solanum tuberosum], gi:1654140 [Lycopersicon esculentum] Length = 917 Score = 29.1 bits (62), Expect = 3.4 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 5/56 (8%) Frame = +3 Query: 591 SKSPNKHNRLFMKAQPM-----PDGLPEDIDEGRVNPRDDFKTRARYLTEKYEYDV 743 SK+ N R+ ++QP PDG+ E ++ V+ R D K + Y+YDV Sbjct: 204 SKNDNPQARIIFRSQPCLPSETPDGIKELREKDLVSVRGDGKGERKPHERIYDYDV 259 >At5g59740.1 68418.m07488 UDP-galactose/UDP-glucose transporter-related weak similarity to UDP-galactose/UDP-glucose transporter [Arabidopsis thaliana] GI:22651763 Length = 344 Score = 28.7 bits (61), Expect = 4.5 Identities = 10/29 (34%), Positives = 18/29 (62%) Frame = -3 Query: 220 VTRGHILNSFNITSHHKDCTLDSLLIQVL 134 + +GH+L + + S H+DC LD L+ + Sbjct: 228 ILQGHLLPAVDFVSLHRDCLLDIALLSTV 256 >At4g33440.1 68417.m04751 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein weak similarity to SP|P27644 Polygalacturonase (EC 3.2.1.15) (Pectinase) {Agrobacterium tumefaciens}; contains PF00295: Glycosyl hydrolases family 28 Length = 475 Score = 28.7 bits (61), Expect = 4.5 Identities = 10/36 (27%), Positives = 21/36 (58%) Frame = +1 Query: 211 LW*HLWSCWSRSVLSKTGTITTFKNAHNMKVMKFSV 318 +W LW W+R+++ G + KN+HN+ + ++ Sbjct: 193 MWWELW--WNRTLVHTRGHLIELKNSHNILISNLTL 226 >At3g46180.1 68416.m04997 UDP-galactose/UDP-glucose transporter-related contains weak similarity to UDP-galactose/UDP-glucose transporter (GI:22651763) [Arabidopsis thaliana] Length = 347 Score = 28.3 bits (60), Expect = 6.0 Identities = 9/29 (31%), Positives = 17/29 (58%) Frame = -3 Query: 220 VTRGHILNSFNITSHHKDCTLDSLLIQVL 134 + +GH+L + + S H+DC D L+ + Sbjct: 229 ILQGHLLPAVDFVSRHRDCLFDIALLSTV 257 >At1g24050.1 68414.m03036 expressed protein Length = 173 Score = 28.3 bits (60), Expect = 6.0 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +2 Query: 35 KGRFYAFGRVFSGKVVTGQKARIMGPNFTPG 127 +G +A G ++S KV+TG + R +G PG Sbjct: 15 EGEKFAVGNIYSVKVITGDEFRGIGTKPRPG 45 >At2g41620.1 68415.m05143 nucleoporin interacting component family protein contains Pfam profile PF04097: Nucleoporin interacting component Length = 861 Score = 27.9 bits (59), Expect = 7.9 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = -3 Query: 118 KVWSHDASFLSGNNLARENASKGVETTFVGGRHHLAHVH 2 K+W + ++ R+ SK + +G RHHL H H Sbjct: 251 KIWQLVQAITGEDSAVRQGVSKRMALA-IGARHHLQHGH 288 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,977,531 Number of Sequences: 28952 Number of extensions: 390065 Number of successful extensions: 1140 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 1099 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1136 length of database: 12,070,560 effective HSP length: 80 effective length of database: 9,754,400 effective search space used: 1736283200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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