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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0727
         (783 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    46   6e-06
SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po...    27   2.3  
SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c...    27   2.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    27   3.0  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   3.0  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    27   3.0  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    27   4.0  
SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c...    26   5.3  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   5.3  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    26   5.3  
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo...    26   7.0  
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    26   7.0  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    26   7.0  

>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 46.0 bits (104), Expect = 6e-06
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
 Frame = +2

Query: 518 SNLHYLAPMFSNLACSHRIRKWLC--EENPHV-PLIKLIPFCNYDVSNIRKGGAIGTIRN 688
           +N  +LA +F+++    R RK+    +E  HV P  KL+ F  +  S +R+ G    I+N
Sbjct: 158 ANFDFLANVFADMTRFERGRKYFTTLQEYDHVIPASKLVVFTEHK-SLLRRTGVAAIIKN 216

Query: 689 ISFDTDYHEFLVSPD-LDLLTYILYP*WGNED 781
           ISFD  + + L+  + +++L Y+L P  G E+
Sbjct: 217 ISFDIPFQKVLMDEEGINVLPYLLLPLAGPEE 248



 Score = 29.5 bits (63), Expect = 0.57
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 315 KPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLED 431
           K L     + L+ S V NP    AD +CM L N+ + ED
Sbjct: 80  KVLMDDEFLQLIFSIVTNPLHGLADLSCMLLCNLAKEED 118


>SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = +1

Query: 82  IEFLKPESRIDLRHISMDYLVSLSGTEDGVNKMLEHERITQAVIE--LTDDRIKEIAKHA 255
           IEF+ P+    L      +  ++ G ++G+  +L+ + IT   I    TD  +KE A HA
Sbjct: 113 IEFVIPKGSDRLVESYSGFYDAI-GRDNGLKAILDKKGITDVFIAGVATDICVKETALHA 171

Query: 256 S*CSLTYLPTRVALQSFSNTSHCAIK 333
                TY+ +     S + + + AIK
Sbjct: 172 RHWYNTYIISEAVKGSSTESHNQAIK 197


>SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 147

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 414 ITRLEDEL-EVCLNTFIPHLNDIMNA-FVNTEFKRPVRTCITWRPCL 548
           +T+ +DE+ E  +NTF P   D   A FVN +  +  +    WRP L
Sbjct: 46  LTKYDDEIFEDLINTF-PEFKDPKTASFVNEDEMKSAKGKAAWRPFL 91


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/84 (25%), Positives = 42/84 (50%)
 Frame = +3

Query: 261 MLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLEDELE 440
           +LV + ++ +G T    ++ + Y++ ID   S     +K D     + L NIT L  + +
Sbjct: 273 LLVRLVSFAKGITLAKPFQHITYQHAIDKYGS-----DKPDIRFE-LPLKNITSLLPKQD 326

Query: 441 VCLNTFIPHLNDIMNAFVNTEFKR 512
             ++T I   ND+ ++  N E ++
Sbjct: 327 PLISTEILVYNDLSHSLSNAESRK 350


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
 Frame = +3

Query: 261  MLVNISAYTRGATE-LLKYKPLRYKNIIDLLISYVLNPNKTDADAA------CMTLSNIT 419
            +LVN+  YT G+TE  +  K + ++ II L+I      + + A+         +  S ++
Sbjct: 1662 LLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILS 1721

Query: 420  RLEDELEVCLNTFIPHLNDIMNAFV 494
             L+D  +V  + F+   + I+  F+
Sbjct: 1722 ELDDAKDVLESCFVDIYSVILECFL 1746


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
 Frame = +1

Query: 97  PESRIDLRHISMDYLVSLSGTEDGVNKMLEHERITQ---AVIELTDDRI 234
           P+ R  + + +++   S S +EDG N+   HE +T    ++ ++ D+RI
Sbjct: 543 PDDRKAMDNATLEMATSRSYSEDGKNEKTTHEDVTMKETSLKKMDDERI 591


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 149 RLTR*SMDMCLKSILDSGFRNSINSSKESSAIVCNRI 39
           R TR       +++L++GFRNS   +++SS  +  R+
Sbjct: 93  RRTRNRSQTQRRTLLENGFRNSRKKAQDSSNSIAERV 129


>SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)
 Frame = +1

Query: 64  DSFDELIEFLKPESRIDLRHISMDYLVSLSGTEDGV---NKMLEHERITQAVIEL 219
           + FD L E  KP+SR+       D      G   GV   N  L H R   A+ ++
Sbjct: 68  ERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQV 122


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
 Frame = +3

Query: 255 LLMLVNISAYTRGATELLKYKPLRYKNIIDLL----ISYVLNPNKTDADAACMTLSNITR 422
           +L +V  +AY  GA ++ ++  L++ + ID      I   L           + L     
Sbjct: 33  VLAIVKANAYGHGAVQVARFL-LKHCSSIDGFGVSSIEEALELRHGGIYNKIVLLEGFFT 91

Query: 423 LEDELEVCLN---TFIPHLNDIMNAFVNTEFKRPV 518
            EDEL++  +   + I H  D +N+F+   F RPV
Sbjct: 92  EEDELKLIDDYNFSIIIHSEDQVNSFIKYPFNRPV 126


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 584 LCEENPHVPLIKLIPFCNYDVSNIRKGGAIGTI-RNISFDTDYHEFLV 724
           +C EN   PL KL+P C       RK G    +  ++ FDTD+H F +
Sbjct: 181 VCTENLS-PLFKLLP-CK------RKAGIASLLDSHLFFDTDWHSFSI 220


>SPCC576.10c |rpt3||19S proteasome regulatory subunit
           Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 389

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 683 RNISFDTDYHEFLVSPDLDLLTYILYP 763
           R + F T   + L+SP++DL T+I+ P
Sbjct: 311 RRLVFQTITAKMLLSPEVDLDTFIMRP 337


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 518 SNLHYLAPMF-SNLACSHRIRKWLCEENPHVP 610
           SN+ +++ +   +L  +H I KWL  +  H+P
Sbjct: 371 SNVDHMSSLILGSLKLAHAIMKWLVSDVEHIP 402


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
            Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 57   GARFFRRIDRIPETRVQDRLETHIHGLSRQPIGDGRR 167
            G  +++R+  +   + Q R    IH L+RQP+   +R
Sbjct: 1067 GVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKR 1103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,238,942
Number of Sequences: 5004
Number of extensions: 68029
Number of successful extensions: 229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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