BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0727 (783 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces... 46 6e-06 SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces po... 27 2.3 SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|c... 27 2.3 SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch... 27 3.0 SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 27 3.0 SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||... 27 3.0 SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar... 27 4.0 SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|c... 26 5.3 SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 26 5.3 SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual 26 5.3 SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 26 7.0 SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ... 26 7.0 SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 7.0 >SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 356 Score = 46.0 bits (104), Expect = 6e-06 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 4/92 (4%) Frame = +2 Query: 518 SNLHYLAPMFSNLACSHRIRKWLC--EENPHV-PLIKLIPFCNYDVSNIRKGGAIGTIRN 688 +N +LA +F+++ R RK+ +E HV P KL+ F + S +R+ G I+N Sbjct: 158 ANFDFLANVFADMTRFERGRKYFTTLQEYDHVIPASKLVVFTEHK-SLLRRTGVAAIIKN 216 Query: 689 ISFDTDYHEFLVSPD-LDLLTYILYP*WGNED 781 ISFD + + L+ + +++L Y+L P G E+ Sbjct: 217 ISFDIPFQKVLMDEEGINVLPYLLLPLAGPEE 248 Score = 29.5 bits (63), Expect = 0.57 Identities = 15/39 (38%), Positives = 20/39 (51%) Frame = +3 Query: 315 KPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLED 431 K L + L+ S V NP AD +CM L N+ + ED Sbjct: 80 KVLMDDEFLQLIFSIVTNPLHGLADLSCMLLCNLAKEED 118 >SPBC365.20c ||SPBC557.06c|nicotinamidase |Schizosaccharomyces pombe|chr 2|||Manual Length = 220 Score = 27.5 bits (58), Expect = 2.3 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 2/86 (2%) Frame = +1 Query: 82 IEFLKPESRIDLRHISMDYLVSLSGTEDGVNKMLEHERITQAVIE--LTDDRIKEIAKHA 255 IEF+ P+ L + ++ G ++G+ +L+ + IT I TD +KE A HA Sbjct: 113 IEFVIPKGSDRLVESYSGFYDAI-GRDNGLKAILDKKGITDVFIAGVATDICVKETALHA 171 Query: 256 S*CSLTYLPTRVALQSFSNTSHCAIK 333 TY+ + S + + + AIK Sbjct: 172 RHWYNTYIISEAVKGSSTESHNQAIK 197 >SPBC3E7.07c |||DUF757 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 147 Score = 27.5 bits (58), Expect = 2.3 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%) Frame = +3 Query: 414 ITRLEDEL-EVCLNTFIPHLNDIMNA-FVNTEFKRPVRTCITWRPCL 548 +T+ +DE+ E +NTF P D A FVN + + + WRP L Sbjct: 46 LTKYDDEIFEDLINTF-PEFKDPKTASFVNEDEMKSAKGKAAWRPFL 91 >SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 611 Score = 27.1 bits (57), Expect = 3.0 Identities = 21/84 (25%), Positives = 42/84 (50%) Frame = +3 Query: 261 MLVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLEDELE 440 +LV + ++ +G T ++ + Y++ ID S +K D + L NIT L + + Sbjct: 273 LLVRLVSFAKGITLAKPFQHITYQHAIDKYGS-----DKPDIRFE-LPLKNITSLLPKQD 326 Query: 441 VCLNTFIPHLNDIMNAFVNTEFKR 512 ++T I ND+ ++ N E ++ Sbjct: 327 PLISTEILVYNDLSHSLSNAESRK 350 >SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 2100 Score = 27.1 bits (57), Expect = 3.0 Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 7/85 (8%) Frame = +3 Query: 261 MLVNISAYTRGATE-LLKYKPLRYKNIIDLLISYVLNPNKTDADAA------CMTLSNIT 419 +LVN+ YT G+TE + K + ++ II L+I + + A+ + S ++ Sbjct: 1662 LLVNVVKYTEGSTEGTVSSKSVLFRKIIALIIGVFAELHNSMAEFVHQKTFFRLFSSILS 1721 Query: 420 RLEDELEVCLNTFIPHLNDIMNAFV 494 L+D +V + F+ + I+ F+ Sbjct: 1722 ELDDAKDVLESCFVDIYSVILECFL 1746 >SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2|||Manual Length = 625 Score = 27.1 bits (57), Expect = 3.0 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%) Frame = +1 Query: 97 PESRIDLRHISMDYLVSLSGTEDGVNKMLEHERITQ---AVIELTDDRI 234 P+ R + + +++ S S +EDG N+ HE +T ++ ++ D+RI Sbjct: 543 PDDRKAMDNATLEMATSRSYSEDGKNEKTTHEDVTMKETSLKKMDDERI 591 >SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 205 Score = 26.6 bits (56), Expect = 4.0 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -2 Query: 149 RLTR*SMDMCLKSILDSGFRNSINSSKESSAIVCNRI 39 R TR +++L++GFRNS +++SS + R+ Sbjct: 93 RRTRNRSQTQRRTLLENGFRNSRKKAQDSSNSIAERV 129 >SPAC27E2.03c |||GTP binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 392 Score = 26.2 bits (55), Expect = 5.3 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Frame = +1 Query: 64 DSFDELIEFLKPESRIDLRHISMDYLVSLSGTEDGV---NKMLEHERITQAVIEL 219 + FD L E KP+SR+ D G GV N L H R A+ ++ Sbjct: 68 ERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQV 122 >SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pombe|chr 3|||Manual Length = 375 Score = 26.2 bits (55), Expect = 5.3 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 7/95 (7%) Frame = +3 Query: 255 LLMLVNISAYTRGATELLKYKPLRYKNIIDLL----ISYVLNPNKTDADAACMTLSNITR 422 +L +V +AY GA ++ ++ L++ + ID I L + L Sbjct: 33 VLAIVKANAYGHGAVQVARFL-LKHCSSIDGFGVSSIEEALELRHGGIYNKIVLLEGFFT 91 Query: 423 LEDELEVCLN---TFIPHLNDIMNAFVNTEFKRPV 518 EDEL++ + + I H D +N+F+ F RPV Sbjct: 92 EEDELKLIDDYNFSIIIHSEDQVNSFIKYPFNRPV 126 >SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual Length = 545 Score = 26.2 bits (55), Expect = 5.3 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%) Frame = +2 Query: 584 LCEENPHVPLIKLIPFCNYDVSNIRKGGAIGTI-RNISFDTDYHEFLV 724 +C EN PL KL+P C RK G + ++ FDTD+H F + Sbjct: 181 VCTENLS-PLFKLLP-CK------RKAGIASLLDSHLFFDTDWHSFSI 220 >SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizosaccharomyces pombe|chr 3|||Manual Length = 389 Score = 25.8 bits (54), Expect = 7.0 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = +2 Query: 683 RNISFDTDYHEFLVSPDLDLLTYILYP 763 R + F T + L+SP++DL T+I+ P Sbjct: 311 RRLVFQTITAKMLLSPEVDLDTFIMRP 337 >SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 25.8 bits (54), Expect = 7.0 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = +2 Query: 518 SNLHYLAPMF-SNLACSHRIRKWLCEENPHVP 610 SN+ +++ + +L +H I KWL + H+P Sbjct: 371 SNVDHMSSLILGSLKLAHAIMKWLVSDVEHIP 402 >SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit Rpa2|Schizosaccharomyces pombe|chr 2|||Manual Length = 1227 Score = 25.8 bits (54), Expect = 7.0 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +3 Query: 57 GARFFRRIDRIPETRVQDRLETHIHGLSRQPIGDGRR 167 G +++R+ + + Q R IH L+RQP+ +R Sbjct: 1067 GVVYYQRLRHMVSDKFQVRTTGPIHNLTRQPVKGRKR 1103 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,238,942 Number of Sequences: 5004 Number of extensions: 68029 Number of successful extensions: 229 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 229 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 379359666 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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