Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0727
         (783 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    29   5.5  
12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003     28   9.6  
12_01_0107 - 843820-846335,846400-846511                               28   9.6  
11_01_0107 - 801148-803633,803727-803860,803990-804006,804321-80...    28   9.6  
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    28   9.6  
03_06_0343 + 33274329-33274981,33275197-33276121                       28   9.6  

>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 312  YKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLEDELEVCLNTFIPHLNDIMNA 488
            Y  L    +I+L++    +P+K     AC  + N     D L   L   IP L  ++ A
Sbjct: 1085 YSSLATNKVIELVVDRCSDPDKRTRKFACFAVGNAAYHNDMLYEELRRSIPQLTKLLLA 1143


>12_02_0991 + 25079293-25079925,25080221-25081116,25081721-25082003
          Length = 603

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -2

Query: 626 VLILLTVHGDSLRRATSLFCGCRPGC*TWAPGNAGSNRSFKLCVHEC 486
           + + ++VHGD LRR+++ F   +    + + G+ G      L +H+C
Sbjct: 131 IAVRMSVHGDVLRRSSAFFAE-KLSSSSSSSGSGGHGHGSCLEIHDC 176


>12_01_0107 - 843820-846335,846400-846511
          Length = 875

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 45  ITHNGARFFRRIDRIPETRVQDRLETHIHGLSRQ 146
           + HN +  F++IDR+   R  D L   ++ LS Q
Sbjct: 550 LEHNRSNRFKKIDRLERLRKMDDLRDQLNRLSSQ 583


>11_01_0107 -
           801148-803633,803727-803860,803990-804006,804321-804504,
           804819-804883
          Length = 961

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 45  ITHNGARFFRRIDRIPETRVQDRLETHIHGLSRQ 146
           + HN +  F++IDR+   R  D L   ++ LS Q
Sbjct: 636 LEHNRSNRFKKIDRLERLRKMDDLRDQLNRLSSQ 669


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 293 ATRVGRYVNEHQEACLAISLILSSVNSMT 207
           A   G++ N HQE C AI+++ ++   MT
Sbjct: 188 ANMAGKFDNAHQEYCHAIAVVQATSKQMT 216


>03_06_0343 + 33274329-33274981,33275197-33276121
          Length = 525

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 533 GNAGSNRSFKLCVHECVHDIV*MGY 459
           G A   RS++L  HEC  D+V   Y
Sbjct: 161 GRASQRRSYRLVFHECHRDLVRSAY 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,957,984
Number of Sequences: 37544
Number of extensions: 440178
Number of successful extensions: 1089
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1053
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)