Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0727
         (783 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21786| Best HMM Match : DUF383 (HMM E-Value=0)                      51   9e-07
SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)                   29   4.2  
SB_52361| Best HMM Match : EutS (HMM E-Value=1)                        29   4.2  
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)                    29   5.6  
SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_58318| Best HMM Match : K-box (HMM E-Value=5.6)                     28   9.8  

>SB_21786| Best HMM Match : DUF383 (HMM E-Value=0)
          Length = 335

 Score = 51.2 bits (117), Expect = 9e-07
 Identities = 26/83 (31%), Positives = 49/83 (59%)
 Frame = +2

Query: 533 LAPMFSNLACSHRIRKWLCEENPHVPLIKLIPFCNYDVSNIRKGGAIGTIRNISFDTDYH 712
           LA   SNL    + R+ + +    V + +L+PF  +  S  R+GG +  ++N  F+TD H
Sbjct: 162 LALFISNLTQMKKGRELMLDRKRCV-IQRLLPFTQHKSSLNRRGGVVTILKNCCFETDTH 220

Query: 713 EFLVSPDLDLLTYILYP*WGNED 781
           ++L++ ++D+L ++L P  G E+
Sbjct: 221 DWLLNDEVDILPHLLLPLAGGEE 243



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 27/66 (40%), Positives = 37/66 (56%)
 Frame = +3

Query: 264 LVNISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNKTDADAACMTLSNITRLEDELEV 443
           L+N+SA    A +LLK+K      II  L+ Y+LN N   AD   + LSN+TR E   E+
Sbjct: 75  LINLSAVPALAEKLLKFK------IIIPLVDYLLNENSIHADKCAVVLSNLTRTESTCEI 128

Query: 444 CLNTFI 461
            LN  +
Sbjct: 129 ALNELL 134



 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 20/60 (33%), Positives = 35/60 (58%)
 Frame = +1

Query: 76  ELIEFLKPESRIDLRHISMDYLVSLSGTEDGVNKMLEHERITQAVIELTDDRIKEIAKHA 255
           EL+ FLK   R D+R+ ++DY++ L+ TE G   +  +E     + +LT D  ++I+  A
Sbjct: 12  ELLGFLKQSERGDVRYFALDYILGLTVTESGQQFLKNNEEFLSQLYKLTRDSNEKISSDA 71


>SB_48611| Best HMM Match : SKI (HMM E-Value=0.00037)
          Length = 926

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 581 WLCEENPHVPLIKL---IPFCNYDVSNIRKGGAIGTIRNISFDTDYHEFLVSPDL 736
           W+  +NPHVP   L     F + + S    GG IG   N +  + Y  FL++P+L
Sbjct: 64  WVVNKNPHVPFCSLGADNAFEHVNRSMKVSGGLIGITLNQNARSKY--FLIAPEL 116


>SB_52361| Best HMM Match : EutS (HMM E-Value=1)
          Length = 682

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 581 WLCEENPHVPLIKL---IPFCNYDVSNIRKGGAIGTIRNISFDTDYHEFLVSPDL 736
           W+  +NPHVP   L     F + + S    GG IG   N +  + Y  FL++P+L
Sbjct: 565 WVVNKNPHVPFCSLGADNAFEHVNRSMKVSGGLIGITLNQNARSKY--FLIAPEL 617


>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
          Length = 1311

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 42   PITHNGARFFRRID-RIPETRVQDRLETHIHGLS 140
            PI     ++ R ID ++PE  V DR + H H LS
Sbjct: 1175 PIPEGSGKYSRDIDCKLPEVLVVDREDLHYHPLS 1208


>SB_30264| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 689

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 273 ISAYTRGATELLKYKPLRYKNIIDLLISYVLNPNKTDADAACMTLSN 413
           I    +   + +++KP R  NI+DL+  +V NPN  ++   C  +S+
Sbjct: 93  IDMTVQNGLQQVQHKPSRQNNILDLV--FVNNPNIINSTLVCPGMSD 137


>SB_58318| Best HMM Match : K-box (HMM E-Value=5.6)
          Length = 584

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 517 FEPALPGAHV*QP-GLQPQNKEVALRRESPCTVNKINTVL 633
           F+P LPG     P  L P+N   +LRR  P +   ++  L
Sbjct: 59  FDPLLPGRRQKGPESLDPENSLFSLRRRRPSSFPNVDATL 98


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,481,807
Number of Sequences: 59808
Number of extensions: 527154
Number of successful extensions: 1243
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)