Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0727
         (783 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical pr...    29   5.0  
Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine rece...    28   6.6  
AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical ...    28   6.6  

>U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical
           protein C06G1.5 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 653 IRKGGAIGTIRNISFDTDYHEFL 721
           +RKGG +  IRN+ FD D ++ L
Sbjct: 298 LRKGGVLQAIRNLQFDDDINKSL 320


>Z70213-1|CAA94175.1| 1354|Caenorhabditis elegans Hypothetical protein
            ZK930.1 protein.
          Length = 1354

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +3

Query: 447  LNTFIPHLNDIMNAFVNTEFKRPVRTCITWRPCLATWPAATE*GSGSAKRI 599
            +N  + HLN++    VN   KRP+    +  P L+  P+A   GS S   +
Sbjct: 907  VNEMLAHLNELHMRNVNCRPKRPLAASAS-HPVLSASPSAGSLGSSSNNNV 956


>U53139-4|AAK18931.2|  369|Caenorhabditis elegans Serpentine
           receptor, class w protein67 protein.
          Length = 369

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = -2

Query: 704 LCRMIY-YVLYRSHHPSVCWTHHSYRTVLILLTVH--GDSLRRATS 576
           LC  I+ Y L        CW +HSY  V I + V    D LRRA++
Sbjct: 82  LCLFIHAYTLTLIFPDDRCWNYHSYINVFIEVWVSSLNDVLRRASA 127


>AF016669-3|AAB66097.1|  275|Caenorhabditis elegans Hypothetical
           protein K10G6.2 protein.
          Length = 275

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -3

Query: 757 QNVCKQIQVRAH*ELVVVCVE*YITYCTDRTTLPYVGHI 641
           ++ C+   +  + E V +  E Y TYC+DR   P + HI
Sbjct: 66  RHYCRSSNIATYNEEVRIICERYRTYCSDR-VYPSINHI 103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,908,517
Number of Sequences: 27780
Number of extensions: 382427
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)