Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0727
         (783 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          25   0.79 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   2.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   5.6  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   5.6  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -2

Query: 668 HHPSVCWTHHSYRTVLILLTVHGDSLRRATSLF 570
           HH S  WT       L  L  H  SL +A++ F
Sbjct: 405 HHGSKSWTQEDMDAALEALRNHDMSLTKASATF 437


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 137 ISSAYRGRKTVLTKCLNTKESLKPSSN*RTTESKKSLNT 253
           +++ YR +KTV  K +N+K  LK +   +    +   NT
Sbjct: 315 VNTIYRRKKTVPLKKVNSKYILKSTLTPKLARKQFQKNT 353


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 122 TYPWTISSAYRGRKTVLTKCLNTKESLKP 208
           T+P      Y+GR  V+  C+   +  +P
Sbjct: 83  TFPTIKIVGYKGRALVVVSCVTKDQPYRP 111


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +2

Query: 122 TYPWTISSAYRGRKTVLTKCLNTKESLKP 208
           T+P      Y+GR  V+  C+   +  +P
Sbjct: 83  TFPTIKIVGYKGRALVVVSCVTKDQPYRP 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,086
Number of Sequences: 438
Number of extensions: 4566
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)