Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0727
(783 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5 ... 32 0.49
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 31 0.65
At3g43920.1 68416.m04701 ribonuclease III family protein similar... 31 0.86
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 30 1.5
At3g51530.1 68416.m05643 F-box family protein various predicted ... 29 4.6
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 29 4.6
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 29 4.6
At1g27290.1 68414.m03325 expressed protein 29 4.6
At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5 ... 28 6.1
At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase fa... 28 8.0
At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containi... 28 8.0
At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063... 28 8.0
>At5g26900.1 68418.m03208 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; WD-repeat protein, carrot, PIR:T14352
Length = 444
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 551 NLACSHRIRKWLCEENPHVPLIKLIPFCNYDVSNIRKGGAIG 676
+LA S + R+WL H ++ + +C + S + GG +G
Sbjct: 282 SLASSKQTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVG 323
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 31.5 bits (68), Expect = 0.65
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 551 NLACSHRIRKWLCEENPHVPLIKLIPFCNYDVSNIRKGGAIG 676
+LA S+ R+WL H ++ + +C + S + GG +G
Sbjct: 266 SLASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVG 307
>At3g43920.1 68416.m04701 ribonuclease III family protein similar to
RNA helicase/RNAseIII CAF protein [Arabidopsis thaliana]
GI:6102610; contains Pfam profiles PF02170: PAZ domain,
PF00636: RNase3 domain
Length = 1531
Score = 31.1 bits (67), Expect = 0.86
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 551 NLACSHRIRKWLCEENPHVPLIKLIPFCNYDVSNIRKGGAIGTI 682
NLAC+H R+ L E + I +IPF N++KGG GT+
Sbjct: 1402 NLACNHSDRETLTSETTEIQSI-VIPFIG--PINMKKGGPRGTL 1442
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 30.3 bits (65), Expect = 1.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 551 NLACSHRIRKWLCEENPHVPLIKLIPFCNYDVSNIRKGGAIG 676
++A S+ R+WL H ++ + +C + S + GG +G
Sbjct: 249 SVASSNPTRQWLHRFEEHTAAVRALAWCPFQASLLATGGGVG 290
>At3g51530.1 68416.m05643 F-box family protein various predicted
proteins, Arabidopsis thaliana; contains Pfam profile
PF00646: F-box domain
Length = 455
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 659 SVCWTHHSYRTVLILLTVHGDSLRRATSLFC 567
++ +T H VL L + HG +R TSLFC
Sbjct: 120 TIAFTRHVREFVLDLSSYHGPRVRFPTSLFC 150
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 326 AQWLVFEKLCSATRVGRYVNEHQEACLAISLILSS 222
A++ VFE+ SA VG+ E Q+ ++L+LSS
Sbjct: 277 AEYAVFEQGASAGNVGKDTTEEQKNANPVALLLSS 311
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 326 AQWLVFEKLCSATRVGRYVNEHQEACLAISLILSS 222
A++ VFE+ SA VG+ E Q+ ++L+LSS
Sbjct: 281 AEYAVFEQGASAGNVGKDTTEEQKNANPVALLLSS 315
>At1g27290.1 68414.m03325 expressed protein
Length = 142
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 440 SLPEHFYTPSKRYHERIREHRV*KTGSNLHYLAPM-FSNLACSHRIRKWLC 589
SLP+HF P R HR + +L +++P F++L + LC
Sbjct: 33 SLPDHFPDPPARIRPPFSSHRFSSSSPSLAHISPSGFASLLLGISVALMLC 83
>At5g27080.1 68418.m03231 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis};
Length = 466
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/42 (23%), Positives = 21/42 (50%)
Frame = +2
Query: 551 NLACSHRIRKWLCEENPHVPLIKLIPFCNYDVSNIRKGGAIG 676
++A S R+WL H ++ + +C + + + GG +G
Sbjct: 280 SVASSKPTRQWLHRFEEHTAAVRALAWCPFQATLLATGGGVG 321
>At4g19860.1 68417.m02910 lecithin:cholesterol acyltransferase
family protein / LACT family protein similar to
lysosomal phospholipase A2 [Mus musculus] GI:18699602;
contains Pfam profile PF02450: Lecithin:cholesterol
acyltransferase (phosphatidylcholine-sterol
acyltransferase)
Length = 535
Score = 27.9 bits (59), Expect = 8.0
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Frame = -1
Query: 747 VSRSKSGLTRNSW*SVSNDILRI-----VPIAPPFRMLD---TS*LQNGINFINGTWGFS 592
+S S GL + + +DI + IA PFR TS L NG++F+NG W
Sbjct: 179 ISHSMGGLLVKCFMGLHSDIFEKYVQNWIAIAAPFRGAPGYITSTLLNGMSFVNG-W--- 234
Query: 591 SQSHFLILWLQARLL 547
Q+ F+ W +LL
Sbjct: 235 EQNFFVSKWSMHQLL 249
>At1g79080.1 68414.m09220 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 576
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Frame = -2
Query: 737 PSPGSLGTRGSLC------RMIYYVLYRSHHPSVCWTHHSYRTVLILLTVHGDSLRRATS 576
P+ G+ GSLC + +Y++ + C TH Y++V+ L G++
Sbjct: 386 PNEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQL 445
Query: 575 LF----CGCRPGC*TWA 537
L+ CG P T++
Sbjct: 446 LYEMTRCGFDPDAHTYS 462
>At1g14300.1 68414.m01695 expressed protein contains Pfam PF04063:
Domain of unknown function (DUF383) and PF04064: Domain
of unknown function (DUF384)
Length = 339
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/62 (22%), Positives = 35/62 (56%)
Frame = +1
Query: 73 DELIEFLKPESRIDLRHISMDYLVSLSGTEDGVNKMLEHERITQAVIELTDDRIKEIAKH 252
+EL+EFL S ++ +++ + L+G+E+G+ + ++ I + + KE+++
Sbjct: 6 EELVEFLSSPSP-PVKKAAVEIVSGLTGSEEGLQSLSKYSEILLPSLSQLLNESKEVSEP 64
Query: 253 AS 258
A+
Sbjct: 65 AA 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,808,009
Number of Sequences: 28952
Number of extensions: 351885
Number of successful extensions: 916
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -