Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0726
(625 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr 3|... 65 7e-12
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 29 0.55
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma... 27 1.7
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac... 27 2.9
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz... 26 3.8
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 25 6.7
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 8.9
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 8.9
>SPCC794.12c |mae2||malic enzyme|Schizosaccharomyces pombe|chr
3|||Manual
Length = 565
Score = 65.3 bits (152), Expect = 7e-12
Identities = 33/85 (38%), Positives = 54/85 (63%), Gaps = 3/85 (3%)
Frame = +1
Query: 259 VADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITI--HDKGHVYDVLKNWPETD-VR 429
++ ++ EM+PI+YTPT G A ++F +YR P G ++ I +D ++ L + ++D V
Sbjct: 91 ISQHLIEMIPIIYTPTEGDAIKQFSDIYRYPEGCYLDIDHNDLSYIKQQLSEFGKSDSVE 150
Query: 430 AIVVTDGERILGLGDLGACGMGIPV 504
I++TD E ILG+GD G G+ I V
Sbjct: 151 YIIITDSEGILGIGDQGVGGVLISV 175
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 516 LYTALGGIKPHQCLPITIDVGTNTQSMLDDPLYIGL 623
L T G+ P++ LPI +DVGTN ++ + Y+GL
Sbjct: 180 LMTLCAGLDPNRFLPIVLDVGTNNETHRKNHQYMGL 215
Score = 33.9 bits (74), Expect = 0.019
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +2
Query: 110 IHGLLPPRVKTQEEQVELCKLSIDRY----ENPLNKYIYLMGLLDRNEHLFY 253
I LPP V+T ++QV+ C D+Y + PL K +YL L N+ LFY
Sbjct: 40 ISSRLPPIVETLQQQVDRC---YDQYKAIGDEPLQKNLYLSQLSVTNQTLFY 88
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 30 LSGLDHLKHPGLNKGMAFTIEERQSW 107
L G+ L P NK AFT EERQ +
Sbjct: 13 LKGVTLLNSPRYNKDTAFTPEERQKF 38
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 29.1 bits (62), Expect = 0.55
Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Frame = +1
Query: 250 LPFVADN---VAEMMPIVYTPTVGLACQKFGL 336
LPF+++N ++ MM V P+V LACQ +G+
Sbjct: 4065 LPFLSNNGKFMSSMMSTVSLPSVRLACQLYGV 4096
>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
1|||Manual
Length = 397
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -3
Query: 596 HRLGVRTHVDSDGQTLMRLDASERGVE 516
+RLGV+ H D+D TLM D + +G+E
Sbjct: 269 NRLGVQEHTDADALTLMSQD-NVKGLE 294
>SPAC607.03c |snu13||U3 snoRNP-associated protein
Snu13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 125
Score = 26.6 bits (56), Expect = 2.9
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = -1
Query: 619 PMYSGSSSIDWVFVPTSIVMGRH*CGLMPPSAV*SASCPQGCPSRMRPSRQDPEYVLRRL 440
P+ ++ +VFVP+ +GR CG+ P V SAS S + P Q + + +L
Sbjct: 67 PLLCEDKNVPYVFVPSKAALGRA-CGVSRP--VISASITTNEASDLLPQIQAIKLAIEKL 123
>SPCC1795.08c |||histone acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 985
Score = 26.2 bits (55), Expect = 3.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 349 PRGLFITIHDKGHVYDVLKNWPETDVRA 432
P GL+I + +K +D + W + D RA
Sbjct: 740 PPGLYIPLAEKRTAWDCFERWIQVDPRA 767
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 268 YPRRKVEQMLIAVQEPHKIDVLVKWIFVS 182
YP R V Q LIA+ ++ VL+ W +S
Sbjct: 66 YPERSVFQWLIALTATPRLLVLLLWFTLS 94
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.0 bits (52), Expect = 8.9
Identities = 23/116 (19%), Positives = 48/116 (41%)
Frame = -2
Query: 438 NNGADVRLRPVLKNIVYMSLIVDRDEEAPWSAVHKAELLTGQANRRSVHNWHHFSHVIRD 259
++G+ + +P+LK L++ + PW + + + L + NR + + + + +
Sbjct: 414 SSGSSLAKKPILKRRTPQELLLSGRDLTPWPQIRRFDSLLAR-NRGDIFSNRNHATIRSA 472
Query: 258 ER*NRCSLRSKSPIR*MYLLSGFSYLSIESLHSSTCSSCVLTRGGNNPWIPKTDAL 91
R SK I + + I+SL S + S+ T N+ P D +
Sbjct: 473 LFSQRYPSHSKRHIHFNDRVQQCIAVDIDSLPSDSESASYNTDDANSVVSPSKDGI 528
>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 25.0 bits (52), Expect = 8.9
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 417 LRPVLKNIV-YMSLIVDRDEEAPWSAVHKAELLTGQANRRSVHNW 286
L P ++N V Y + R P++ +H+ Q + +S +NW
Sbjct: 402 LPPGIRNSVDYDGTFLSRKSLPPYNGIHRLHESPSQFSNQSRYNW 446
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,785,911
Number of Sequences: 5004
Number of extensions: 60083
Number of successful extensions: 165
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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