Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0726
(625 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical... 126 1e-29
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr... 29 3.6
AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical ... 28 4.7
Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical pr... 28 6.2
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 28 6.2
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 28 6.2
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 28 6.2
Z83106-1|CAB05493.1| 359|Caenorhabditis elegans Hypothetical pr... 27 8.2
>AL110490-11|CAB54452.1| 620|Caenorhabditis elegans Hypothetical
protein Y48B6A.12 protein.
Length = 620
Score = 126 bits (304), Expect = 1e-29
Identities = 56/85 (65%), Positives = 68/85 (80%), Gaps = 2/85 (2%)
Frame = +1
Query: 259 VADNVAEMMPIVYTPTVGLACQKFGLVYRRPRGLFITIHDK--GHVYDVLKNWPETDVRA 432
+ DNV E+MPIVYTPTVG ACQ FG +YR P+GL+ITI+D ++ +L NWP +VRA
Sbjct: 126 LCDNVKELMPIVYTPTVGQACQHFGFIYRNPKGLYITINDNSISKIHQILANWPTENVRA 185
Query: 433 IVVTDGERILGLGDLGACGMGIPVG 507
IV+TDGERILGLGDLG G+GIPVG
Sbjct: 186 IVITDGERILGLGDLGTYGIGIPVG 210
Score = 62.5 bits (145), Expect = 2e-10
Identities = 27/50 (54%), Positives = 34/50 (68%)
Frame = +3
Query: 474 LGRMRDGHPCGQLALYTALGGIKPHQCLPITIDVGTNTQSMLDDPLYIGL 623
LG G P G+LALY AL GI+P CLP+ +DVGT+ +L+DP Y GL
Sbjct: 200 LGTYGIGIPVGKLALYVALAGIRPEWCLPVILDVGTDNSELLNDPFYTGL 249
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/61 (40%), Positives = 32/61 (52%)
Frame = +2
Query: 71 GYGFYHRRASVLGIHGLLPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEHLF 250
G F LG+HGLLPP T+E+Q + + + L KYI L L DRNE L+
Sbjct: 63 GMAFSLHERQYLGVHGLLPPAFMTEEQQAYRIITKLRQQPDNLAKYIQLDSLQDRNEKLY 122
Query: 251 Y 253
Y
Sbjct: 123 Y 123
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +3
Query: 36 GLDHLKHPGLNKGMAFTIEERQSWGSTG 119
G+D LK PGLNKGMAF++ ERQ G G
Sbjct: 51 GIDLLKSPGLNKGMAFSLHERQYLGVHG 78
>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 122 LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 244
L ++K + ++EL + + ++E+ L+ ++ G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254
>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
T12D8.1 protein.
Length = 2561
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/41 (29%), Positives = 26/41 (63%)
Frame = +2
Query: 122 LPPRVKTQEEQVELCKLSIDRYENPLNKYIYLMGLLDRNEH 244
L ++K + ++EL + + ++E+ L+ ++ G+L RNEH
Sbjct: 1215 LTEQIKVTQAEIELHRRDLKKHESNLSDFVMKHGIL-RNEH 1254
>AF101305-8|AAF98599.1| 534|Caenorhabditis elegans Hypothetical
protein C04F5.9 protein.
Length = 534
Score = 28.3 bits (60), Expect = 4.7
Identities = 11/35 (31%), Positives = 24/35 (68%)
Frame = +2
Query: 200 NKYIYLMGLLDRNEHLFYLSSRITWLK*CQLCTLR 304
N+Y + +G LD++ H F+ ++R ++ C+LC ++
Sbjct: 268 NRYFHSLGRLDQHTHAFHGTARPGFV--CKLCRMK 300
>Z81066-2|CAB02971.1| 239|Caenorhabditis elegans Hypothetical
protein F17B5.3 protein.
Length = 239
Score = 27.9 bits (59), Expect = 6.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 401 RTSYTCPLSWIVMKRPLGR 345
R + TCP WI +RP GR
Sbjct: 66 RPTRTCPRDWITFERPQGR 84
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 499 PVGNSRSTPRSEASSRISVCPSL 567
PVG RSTP + S++I + PS+
Sbjct: 561 PVGAQRSTPATPVSAKIGINPSM 583
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 499 PVGNSRSTPRSEASSRISVCPSL 567
PVG RSTP + S++I + PS+
Sbjct: 543 PVGAQRSTPATPVSAKIGINPSM 565
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.9 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 499 PVGNSRSTPRSEASSRISVCPSL 567
PVG RSTP + S++I + PS+
Sbjct: 543 PVGAQRSTPATPVSAKIGINPSM 565
>Z83106-1|CAB05493.1| 359|Caenorhabditis elegans Hypothetical
protein F22B8.1 protein.
Length = 359
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 195 HLTSTSILWGSWTAMSICST 254
H TS ++LW SW+A+ I +T
Sbjct: 200 HETSPAVLWKSWSAILILTT 219
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,965,689
Number of Sequences: 27780
Number of extensions: 370459
Number of successful extensions: 1129
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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