Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0725
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    28   1.4  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    27   1.9  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    27   1.9  
SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch...    26   4.3  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    26   4.3  
SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit Tim9|Schizosaccha...    26   5.7  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.6  

>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -3

Query: 367 CLGLSVVDPLYGLDFVAGRQSAHRSLTLCCHNGHSLIAAG 248
           C  LS+ +P+Y +    GR+S      +  ++GH L+  G
Sbjct: 225 CKRLSLKEPVYRIIAETGRKSREPVFVIGAYSGHHLLGQG 264


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/81 (20%), Positives = 31/81 (38%)
 Frame = +2

Query: 140 RTAHPHNIFIGWDSSIQRTLIKAITTALSKIVNKTHAGCNKRVAIMATKGKRPMRALTPG 319
           R  H H +   W       L+ AI   + +++ K         A+ + +GK P       
Sbjct: 223 REGHYHKLEGVWRLQFGLALVPAIGVLIPRLIMKESKSYENSKALNSAEGKDPKAFFNTD 282

Query: 320 DKIEAIQRVNDGESKASVARD 382
           D+    +  + G+S+   A D
Sbjct: 283 DEDNMKKSSSHGDSEVVEASD 303


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 142 ARHVSLISQMRSQVTERRRA*RDAPIGTYVADRASRLCAR 23
           A HV LIS  RS  ++ RR   D  I T    R+S   +R
Sbjct: 57  ASHVELISDERSDSSDSRRGKEDFSISTAEVTRSSLSSSR 96


>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = +1

Query: 346 QRRRVQGIGRTRHRRARVHSARLVQERGQTALHDV 450
           +R+RV+ +G T+HR+ R    R++QE     L ++
Sbjct: 4   KRKRVEELGETKHRQVR---QRILQEHKNDILENL 35


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 17/54 (31%), Positives = 27/54 (50%)
 Frame = -3

Query: 175 PTNKNIVWMRSARHVSLISQMRSQVTERRRA*RDAPIGTYVADRASRLCARRDK 14
           P+N+N    RSA  ++L  +  +   E  R   +API T  +  +S L  + DK
Sbjct: 216 PSNENEESKRSAPEIALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDK 269


>SPCC24B10.05 |tim9||Tim9-Tim10 complex subunit
           Tim9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 84

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -2

Query: 134 CVTDFTDAFTSH*AKTRVTRCTDRYVRRGPR 42
           CV DFT +  S+     + +C D++++   R
Sbjct: 39  CVQDFTSSKLSNKESECIAKCADKFLKHSER 69


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 568 AASIPTSTATQLPPAPADASVELTTKRSEPSPIP 669
           A + P ++A+   PAPA A+ +     + P P P
Sbjct: 71  APATPAASASSAAPAPAPAASQNRAYGAAPQPYP 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,376,878
Number of Sequences: 5004
Number of extensions: 43946
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)