Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0725
(675 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18) 36 0.040
SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076) 31 0.85
SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.85
SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06) 31 1.1
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9) 30 1.5
SB_47704| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_25929| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=9.1e-11) 29 2.6
SB_24476| Best HMM Match : 5_3_exonuc_N (HMM E-Value=4.2) 29 2.6
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 29 2.6
SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87) 29 4.5
SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6) 29 4.5
SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_1732| Best HMM Match : GETHR (HMM E-Value=1.7e-06) 28 6.0
SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044) 28 6.0
SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.0
SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11) 28 7.9
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 28 7.9
SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7) 28 7.9
SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_421| Best HMM Match : RVT_1 (HMM E-Value=2.4e-18)
Length = 1046
Score = 35.5 bits (78), Expect = 0.040
Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
Frame = -1
Query: 387 PMSRATDALDSPSLTRCMA--SILSPGVRARIGRL-PFVAIMATRLLQPACVLFTIFDRA 217
P+ RAT DS SL RC+ S S + A R+ P + L +PA F +
Sbjct: 27 PLRRATVPSDSKSLNRCLGLFSYYSQWIPAYSDRIKPITSCKVFPLPEPAVAAFESIKKT 86
Query: 216 VVIAFMSVR*MDESQPIKI 160
V AF+S +DES P ++
Sbjct: 87 VEEAFVSA--IDESIPFEV 103
>SB_56827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 573
Score = 32.3 bits (70), Expect = 0.37
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +2
Query: 302 RALTPGDKIEAIQRVNDGESKASVARDIGVPESTLRGWCKNEDKLRYM 445
++ T DK++ I +++A R+ GV E+ +R W KN++ L+ M
Sbjct: 6 KSYTANDKLKIIGFAGTNDNRAE-EREYGVNETNIRQWRKNKENLKTM 52
>SB_24633| Best HMM Match : Transposase_8 (HMM E-Value=0.076)
Length = 255
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 275 MATKGKRPMRALTPGDKIEAIQRV-NDGESKASVARDIGVPESTLRGWCKNEDKLRYM 445
M +G R ++ + K+E I+ N+G +K R G+P + W K ED + M
Sbjct: 67 MPKEGVRVRKSYSREMKLEVIEWYKNNGLNKNKTCRQFGIPRKCITQWLKMEDVISGM 124
>SB_4199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 31.1 bits (67), Expect = 0.85
Identities = 28/110 (25%), Positives = 50/110 (45%)
Frame = +1
Query: 184 HSTYAHKSDNDCPVKNCKQNTRRLQ*ASGHYGNKG*ATYARSDARRQNRGHTTGQRRRVQ 363
H T H+S P + + T R + S H ++ T +R + H + R +
Sbjct: 39 HETSRHESS---PHETSRHETSRHE-TSRHERSRH-ETRQHERSRHKTSRHESS-RHKTS 92
Query: 364 GIGRTRHRRARVHSARLVQERGQTALHDVTIIVTRHGQEQ*RRASRETSR 513
GR+RH+ +R ++R + R +T H+ +RH + ++ ETSR
Sbjct: 93 RHGRSRHKTSRHETSRHERSRHETRQHE----RSRHKTSRHEKSRHETSR 138
>SB_38760| Best HMM Match : Ras (HMM E-Value=4.6e-06)
Length = 965
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +2
Query: 176 DSSIQRTLIKAITTALSKIVNKTHAGCNKRVAIMATKGKR-PMRALT--PGDKIEAIQRV 346
++S+ RT A TTA ++ N+THAGC +RV + K+ P A+T P K A++R
Sbjct: 783 NNSVVRTSTSA-TTAFTQESNRTHAGCVERVLSGNIELKKTPYYAITKYPQPKNIAMKRK 841
Query: 347 NDGES 361
++ +
Sbjct: 842 DNNNT 846
>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
Length = 907
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 315 PATKSRPYNGSTTESPRHRSHET*ACQSP 401
P ++R YN +TT P H H T C+SP
Sbjct: 330 PVVRTR-YNTTTTSHPLHHVHATIKCESP 357
>SB_47704| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 296
Score = 29.5 bits (63), Expect = 2.6
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +2
Query: 242 THAGCNKRVAIMATKGKRPMRALTPGDKIEAIQRVNDG 355
T G +K++ +GK+P++ +T + A+ ++DG
Sbjct: 186 TSVGLDKKIVFYDVQGKKPVKVITADGPLTAVDFLDDG 223
>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 870
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 583 TSTATQLPPAPADASVELTTKRSE 654
T T TQ PP PAD S +T K+ +
Sbjct: 605 TPTTTQEPPKPADPSAPVTVKKEQ 628
>SB_25929| Best HMM Match : RNA_pol_Rpb2_6 (HMM E-Value=9.1e-11)
Length = 387
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +2
Query: 131 HMPRTAHPHNIFIGWDSSIQRTLIKAITTALSKIVNKTHAGCNKRVAIMATKGKRPMRAL 310
H P +H F+ + I ++ + AL ++VN + + ++ T G P+ A
Sbjct: 9 HAPSISHQMEYFLATGNLISKSGL-----ALQQVVNVVPLVAHM-LRLLCTMGMIPVDAP 62
Query: 311 TPGDKIEAIQRVNDGESKASVARDI 385
PGD V DG SV RD+
Sbjct: 63 VPGDYKNYYPVVMDGRVLGSVDRDL 87
>SB_24476| Best HMM Match : 5_3_exonuc_N (HMM E-Value=4.2)
Length = 200
Score = 29.5 bits (63), Expect = 2.6
Identities = 23/85 (27%), Positives = 37/85 (43%)
Frame = +2
Query: 131 HMPRTAHPHNIFIGWDSSIQRTLIKAITTALSKIVNKTHAGCNKRVAIMATKGKRPMRAL 310
H P +H F+ + I ++ + AL ++VN + + ++ T G P+ A
Sbjct: 9 HAPSISHQMEYFLATGNLISKSGL-----ALQQVVNVVPLVAHM-LRLLCTMGMIPVDAP 62
Query: 311 TPGDKIEAIQRVNDGESKASVARDI 385
PGD V DG SV RD+
Sbjct: 63 VPGDYKNYYPVVMDGRVLGSVDRDL 87
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 568 AASIPTSTATQLPPAPADASVELTTKRSEPSP 663
A + P T T+LPP+P+ + + TT +S P
Sbjct: 3135 AITTPQGTTTELPPSPSTVAQDQTTYKSTTFP 3166
>SB_36190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 993
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 310 DARRQNRGHTTGQRRRVQGIGRTRHRRARVHS 405
D+ R+NR T RRV TRHR+A S
Sbjct: 734 DSVRKNRQQTEASGRRVDKADNTRHRKAATKS 765
>SB_6350| Best HMM Match : Acyl_transf_1 (HMM E-Value=0.87)
Length = 721
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Frame = +2
Query: 164 FIGWDSSIQRTL------IKAITTALSKIVNKTHAGCNKRVAIMATKGKRPMRALT 313
F+G+++ +Q+ AI T + AGCN R+ GK P+R T
Sbjct: 254 FVGYNNKLQKATDSMKLGANAINTETKPVDAHNMAGCNTRLTTCRPGGKAPLRKCT 309
>SB_6151| Best HMM Match : Extensin_2 (HMM E-Value=2.6)
Length = 287
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +1
Query: 580 PTSTATQLPPAPADASVELTTKRSEPSPIP 669
PT +L P PA A V+ K S+ PIP
Sbjct: 76 PTPEHAELNPVPAHAQVDPIPKHSQVDPIP 105
>SB_58115| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +1
Query: 298 YARSDARRQNRGHTTGQRRRVQGIGRTRHRRARVHSARLVQERGQTA 438
Y + +R +G R+ GIG R R H+ R+V+ RG A
Sbjct: 27 YCKVHLKRLRKGIPLPVPCRICGIGTRSETRLRAHAERIVKGRGCVA 73
>SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 512 RDVSLEARRHCSCPCRVTIIVTSCSAVCPRSCTSRAEWTL-ARLC 381
+D ++ +HC R +T C A +S R +W ARLC
Sbjct: 420 KDETINKDKHCPFHDREGHALTDCHAFAKKSLNERTKWIRDARLC 464
>SB_1732| Best HMM Match : GETHR (HMM E-Value=1.7e-06)
Length = 154
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 301 ARSDARRQNRGHTTGQRRRVQGIGRTRHRRARVHSARLVQERGQTALHDVT-IIVTRHGQ 477
AR D R ++ R + +TRH + R+ R + R HD T + TRH +
Sbjct: 27 ARLDKTRHDKTQLDKARHDKTRLDKTRHDKTRLDKTRHDETRLDKTRHDATRLDKTRHDE 86
Query: 478 EQ*RRASRETSR 513
+ + + +R
Sbjct: 87 TRLDKTRHDETR 98
>SB_57427| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00044)
Length = 1693
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 512 RDVSLEARRHCSCPCRVTIIVTSCSAVCPRSCTSRAEWTL-ARLC 381
+D ++ +HC R +T C A +S R +W ARLC
Sbjct: 594 KDETINKDKHCPFHDREGHALTDCHAFAKKSLNERTKWIRDARLC 638
>SB_49936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 28.3 bits (60), Expect = 6.0
Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = -2
Query: 512 RDVSLEARRHCSCPCRVTIIVTSCS-AVCPRSCTSR-AEWTLARLC--LVRPMPWTL 354
R +L RR+ PCR T+ + C + PR CT R +TL R C +RP +TL
Sbjct: 373 RRYTLRPRRYTLSPCRYTL--SPCRYTLRPRCCTLRPCRYTL-RTCRYALRPRHYTL 426
>SB_5019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -2
Query: 512 RDVSLEARRHCSCPCRVTIIVTSCSAVCPRSCTSRAEWTL-ARLC 381
+D ++ +HC R +T C A +S R +W ARLC
Sbjct: 196 KDETINKDKHCPFHDREGHALTDCHAFAKKSLNERTKWIRDARLC 240
>SB_16776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1306
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 326 IEAIQRVNDGESKASV-ARDIGVPESTLRGWCKNEDKLRYM 445
+ +++++ K S +DIGV E+ + GW + KLR M
Sbjct: 1004 LNVVKQLSHANKKLSAHLKDIGVSENEIIGWNEEVQKLREM 1044
>SB_48435| Best HMM Match : Ion_trans (HMM E-Value=1.7e-11)
Length = 1496
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +1
Query: 565 TAASIPTSTATQLPPAPADASVELTTKRSEPSPIPHV 675
T S PT++ P PA + TK + SP P +
Sbjct: 1375 TTPSFPTTSLMLAPVTPASLIISQATKNATSSPTPSI 1411
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 27.9 bits (59), Expect = 7.9
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 356 ESKASVA-RDIGVPEST-LRGWCKNEDKLRYMTSRLSSPDTDKSND 487
+SK V +D P S + G ++D+L Y R SS TDK+ND
Sbjct: 609 KSKEGVPLKDYATPSSLPVNGSSNSQDELDYDVPRPSSMVTDKNND 654
>SB_23990| Best HMM Match : DUF1677 (HMM E-Value=1.7)
Length = 493
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 169 NKNIVWMRSARHVSLISQMRSQVTERRRA*RDAPIGTYVADR 44
NKN+ + +H+ I ++R +V +R D +GT++A +
Sbjct: 317 NKNLDGTKKGKHIHEIRRVRREVQRPKRWESDENLGTHMAKK 358
>SB_6396| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 318 ATKSRPYNGSTTESPRHRSHET*ACQSPLCAAGAR 422
AT S+P G+TT + R SH CQ+ +C R
Sbjct: 345 ATDSQPPYGATTSTNRFHSHARKTCQN-VCICATR 378
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,967,641
Number of Sequences: 59808
Number of extensions: 432412
Number of successful extensions: 1535
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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