Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0725
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          29   0.031
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.7  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.5  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 29.5 bits (63), Expect = 0.031
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 311 TPGDKIEAIQRVNDGESKASVAR-DIGVPESTLRGWCKNE 427
           +P D   A++ +  G++    A  + G+P  TL G CK E
Sbjct: 521 SPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKRE 560


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 156 TIFLLVGIRPFNVRS*KR*RLP--CQKL*TKHTPAAISEWPLWQQRVSDLCAL*RPATKS 329
           +I + V I  +N R  +  R+P   +K+  K+ P  +      + R+  +  +      +
Sbjct: 310 SILVTVIIINWNFRGPRTHRMPQLIRKIFLKYLPTILMMRRPKKTRLRWMMEIPNVTLPT 369

Query: 330 RPYNGSTTESPRH 368
             Y+GS TE P+H
Sbjct: 370 STYSGSPTELPKH 382


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 571 ASIPTSTATQLPPAPADASVELTTKRS 651
           AS P+S+ +  PPA   A+    +KR+
Sbjct: 518 ASAPSSSTSSSPPAKGAAAAGQPSKRN 544


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,955
Number of Sequences: 438
Number of extensions: 3043
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)