Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0724
(770 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0633 + 16416913-16417009,16417976-16418060,16418398-164185... 73 3e-13
12_02_1200 + 26937624-26937674,26937913-26938005,26938582-269387... 33 0.19
08_02_1441 - 27116242-27116354,27116646-27116742,27116841-271170... 31 0.77
05_03_0244 + 10857139-10857516 29 3.1
05_01_0030 + 195663-196691 29 4.1
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 29 5.4
05_06_0007 - 24821841-24822055,24823137-24823358,24823455-24823695 28 7.2
07_03_0808 - 21668100-21669092 28 9.5
06_03_0773 - 24493772-24494252,24494377-24495758 28 9.5
03_06_0090 + 31570588-31570710,31570962-31571080,31572215-315722... 28 9.5
>05_03_0633 +
16416913-16417009,16417976-16418060,16418398-16418551,
16418808-16419023,16419105-16419241,16419317-16419408,
16419622-16419804,16421722-16421819,16422021-16422070,
16424605-16424756,16424944-16425069,16426315-16426523
Length = 532
Score = 72.5 bits (170), Expect = 3e-13
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 2/89 (2%)
Frame = +1
Query: 508 EISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLIS 687
+++A Y CK +EG+LSHQLKQF IDG K ++ + S A K + A E+ EVYA+D++ S
Sbjct: 122 KVAAAYDCKIVEGVLSHQLKQFVIDGNK-VVLSVSNADTKV-DDAEFEENEVYAIDIVTS 179
Query: 688 TGEAVGREMDTR-CTIYKK-TDEVYQFKL 768
TGE + +D + TIYK+ D+ Y K+
Sbjct: 180 TGEGKPKLLDEKQTTIYKRAVDKNYHLKM 208
Score = 65.3 bits (152), Expect = 5e-11
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +2
Query: 299 ILKKGD-LAKIDLGAHIDGFIAVVAHTVVVGESEVSGRAADVXXXXXXXXXXXXXXXKPG 475
I +KGD + D+G HIDGFIAVVAHT V+ + V+G+AADV +PG
Sbjct: 51 ICEKGDSYIRDDMGCHIDGFIAVVAHTHVIHDGAVTGKAADVLAAANTAAEVALRLVRPG 110
Query: 476 TENYAVTEAIQK 511
+N VTEAIQK
Sbjct: 111 KKNKDVTEAIQK 122
Score = 48.4 bits (110), Expect = 6e-06
Identities = 23/59 (38%), Positives = 38/59 (64%)
Frame = +3
Query: 6 EMADEKEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEE 182
E+ +EKE++ + ++ VVTKYK A I+N L+ V++ C P A +ICE GD + ++
Sbjct: 6 EVREEKELDLSSSD--VVTKYKDAADIINNALKLVVSLCKPKAKIVDICEKGDSYIRDD 62
>12_02_1200 +
26937624-26937674,26937913-26938005,26938582-26938728,
26940299-26940379,26940711-26940849,26940977-26941013,
26941095-26941202,26941434-26941533,26941638-26941783,
26941862-26941953,26942086-26942180,26942435-26942531,
26942623-26942766,26942912-26943129,26943213-26943323
Length = 552
Score = 33.5 bits (73), Expect = 0.19
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +2
Query: 266 HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 379
H++P + + +L+ D+ K+D G HIDG+I A TV
Sbjct: 305 HWTPNSGDKT-VLQYDDVMKLDFGTHIDGYIVDCAFTV 341
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +1
Query: 532 KPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLISTGEAVGRE 711
K + + H + ++I KS+ P K E+ +E+ E YA++ STG+ RE
Sbjct: 397 KSVRNLNGHSIGPYQIHAGKSV---PIV---KGGEQTKMEEGEFYAIETFGSTGKGFVRE 450
Query: 712 MDTRCTIYKKTDEV 753
D C+ Y K +V
Sbjct: 451 -DLECSHYMKNFDV 463
>08_02_1441 -
27116242-27116354,27116646-27116742,27116841-27117058,
27117279-27117422,27117512-27117608,27117932-27118026,
27118140-27118231,27118326-27118471,27118565-27118664,
27118857-27118964,27119040-27119085,27119210-27119345,
27119847-27120044
Length = 529
Score = 31.5 bits (68), Expect = 0.77
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 254 HCIC-HFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 379
+C+ H++P + +L+ D+ K+D G HI+G+I A TV
Sbjct: 244 NCVAAHWTPNGGDKT-VLQYDDVMKLDFGTHINGYIVDSAFTV 285
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 625 KEHEKATLEKYEVYAMDVLISTGEAVGREMDTRCTIYKKTDEV 753
K E+ +E+ E YA++ STG+ RE D C+ Y K +V
Sbjct: 366 KGGEQTKMEEGEFYAIETFGSTGKGYVRE-DLECSHYMKNFDV 407
>05_03_0244 + 10857139-10857516
Length = 125
Score = 29.5 bits (63), Expect = 3.1
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = -1
Query: 746 SVFLYI-VHLVSISRPTASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCIILFSPSIRN 570
+VFL++ V LV +S ASP + + SS +SCS + A+ C+ + SP
Sbjct: 5 TVFLFLLVALVVVSAAEASPEPLPARRSRFLLTSSSFYSCSKKSAA-AVCLAVGSPGATC 63
Query: 569 CFSWC 555
C C
Sbjct: 64 CGGRC 68
>05_01_0030 + 195663-196691
Length = 342
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Frame = -2
Query: 280 NGRKVTNAVFTETHVENAMP-FLESFSFLKTLLVSSNTSLS---PNSHISLADASGTHFA 113
+GR V+ +VF +T++ A+P + + + L+TLL+ SLS P+S +L D TH
Sbjct: 76 SGRVVSLSVFQDTNLTGAIPDAIANLTHLRTLLLHHLPSLSGPIPDSLAALTDL--THLT 133
Query: 112 MT 107
++
Sbjct: 134 IS 135
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -2
Query: 532 YNHIQHLFLNGFSDCIVLSTRLQETKSRFTSMMSCQQ 422
+ H+Q+ ++N S+ L T ++E KSR + Q+
Sbjct: 344 FEHLQNQYVNLISENNALQTEIEELKSRIIELQKTQE 380
>05_06_0007 - 24821841-24822055,24823137-24823358,24823455-24823695
Length = 225
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/25 (60%), Positives = 18/25 (72%)
Frame = -3
Query: 762 KLVHLISFFVYCTSGVHFTSNCFTS 688
KLV I+F +YC SGV TS+ FTS
Sbjct: 4 KLVFSITF-LYCLSGVSSTSHYFTS 27
>07_03_0808 - 21668100-21669092
Length = 330
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -2
Query: 175 NTSLSPNSHISLADASGTHFAMTCSRTRFTICPA 74
+ S P+S S + A+G F TC TR++ P+
Sbjct: 172 SASPRPSSPESFSSATGARFRSTCFSTRYSAIPS 205
>06_03_0773 - 24493772-24494252,24494377-24495758
Length = 620
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Frame = -1
Query: 701 TASPVDIRTSIAYTSYFSSVAFSCSLRCASDGFCI-ILFSPSIRNC 567
T P T+ Y Y + C+ C SD FC+ LF P C
Sbjct: 379 TKLPNTTWTASPYVMYERTAEERCADMCLSDCFCVAALFEPDATRC 424
>03_06_0090 +
31570588-31570710,31570962-31571080,31572215-31572284,
31572544-31573492,31574789-31575699
Length = 723
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 299 ILKKGDLAKIDLGAHIDGFIAVVAHTVVVGESEVSGR 409
++ +LA DLG +DG +AV A V+ ++E R
Sbjct: 447 VVPDDNLAAGDLGDELDGIVAVTADAEVLDDAERGAR 483
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,682,238
Number of Sequences: 37544
Number of extensions: 394271
Number of successful extensions: 1102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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