Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0724
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)              111   5e-25
SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)         38   0.007
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)                    29   5.5  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.5  
SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)          29   5.5  
SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.3  
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   28   9.6  

>SB_31371| Best HMM Match : Peptidase_M24 (HMM E-Value=0)
          Length = 465

 Score =  111 bits (268), Expect = 5e-25
 Identities = 48/87 (55%), Positives = 65/87 (74%)
 Frame = +1

Query: 508 EISAEYGCKPIEGMLSHQLKQFRIDGEKSIIQNPSEAQRKEHEKATLEKYEVYAMDVLIS 687
           +++  + CKPIEGMLSHQLK+  IDGEK+IIQNP+E QRK+H K     +EVY +DVL+S
Sbjct: 176 KVAESFKCKPIEGMLSHQLKRNVIDGEKAIIQNPNEQQRKDHSKCEFAVHEVYGVDVLVS 235

Query: 688 TGEAVGREMDTRCTIYKKTDEVYQFKL 768
           TG+   +E DTR T+YK+T  +Y  K+
Sbjct: 236 TGDGKTKEKDTRTTVYKRTGNIYNLKM 262



 Score =  106 bits (254), Expect = 2e-23
 Identities = 50/87 (57%), Positives = 64/87 (73%)
 Frame = +3

Query: 21  KEVEKTIAEDLVVTKYKLAGQIVNRVLEQVIAKCVPDASAREICEFGDKLVLEETNKVFK 200
           +E E TIAED+VVTKYK+AG + NR+L ++I       +AR +CE GD L+LEET+KV+K
Sbjct: 10  EEEEPTIAEDVVVTKYKMAGDMANRILLKLIEAANAGTTARTLCEKGDALILEETDKVYK 69

Query: 201 KEKDSKKGIAFSTCVSVNTAFVTFRPL 281
           KEK+ KKGIAF TC+SVN     F PL
Sbjct: 70  KEKELKKGIAFPTCISVNNCVCHFSPL 96



 Score =  101 bits (242), Expect = 6e-22
 Identities = 48/89 (53%), Positives = 57/89 (64%), Gaps = 3/89 (3%)
 Frame = +2

Query: 254 HCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTVVVG---ESEVSGRAADVX 424
           +C+CHFSP+ SEPD  L  GDL KID G HIDGFIAV+ HT+VVG   E++V+GR ADV 
Sbjct: 88  NCVCHFSPLLSEPDITLNDGDLVKIDFGVHIDGFIAVIGHTIVVGCSKENKVTGRKADVL 147

Query: 425 XXXXXXXXXXXXXXKPGTENYAVTEAIQK 511
                         KPG EN  VTE +QK
Sbjct: 148 LAAYLASEVAQRMVKPGAENSTVTELVQK 176


>SB_10621| Best HMM Match : Peptidase_M24 (HMM E-Value=4.3e-14)
          Length = 708

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 254 HCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 379
           HC  H++P A +   +L   D+ KID G HI+G I   A TV
Sbjct: 12  HCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 52



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = +2

Query: 254 HCICHFSPIASEPDYILKKGDLAKIDLGAHIDGFIAVVAHTV 379
           HC  H++P A +   +L   D+ KID G HI+G I   A TV
Sbjct: 118 HCAAHYTPNAGDKT-VLSYDDVCKIDFGTHINGRIVDCAFTV 158


>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 963

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -1

Query: 446  H*HDELPT------KHLQHVQRLHFHPQLLYELQQL*IHQCEHQDLSWLNLLFSE-CNPV 288
            H ++ +PT      + + +VQ+L F   +   ++ L  H+C H+DL+  N+L      P+
Sbjct: 883  HSYENIPTVSTEQPEEISYVQKLKFAHGIAQGMRHLEKHKCVHRDLAARNVLLGRGLEPI 942

Query: 287  RSQWAKS 267
             S +  S
Sbjct: 943  VSDFGLS 949


>SB_18494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1867

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +1

Query: 541  EGMLSHQLKQFRIDGEKSIIQNP--SEAQRKEHEKATLEKYEVYAMDVLIST 690
            EG+L+H   Q+  D     IQN   ++   K H      KY + A D +I T
Sbjct: 1347 EGILNHTSAQYPKDAPHLFIQNAKVNDFNYKAHNALQGPKYSIKAHDTVIGT 1398


>SB_13773| Best HMM Match : TolA (HMM E-Value=0.042)
          Length = 1558

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
 Frame = +3

Query: 9    MADEKEVEKTIAEDLVVTKYKLAGQIVNRV-LEQVIAKCVPDASAREICEFGDKLVLEET 185
            M + +E  +      + ++  LA ++  R  L   +AK    A   E+ E G K +LEE 
Sbjct: 837  MVEAEEQRERFKNSHIRSEAVLAAKLAARKRLRAEMAK--EKAMKNELKEMGKKQILEEK 894

Query: 186  NKVFKKEKDSKKG 224
             + F+KE + ++G
Sbjct: 895  ERKFRKEMELQEG 907


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/61 (26%), Positives = 33/61 (54%)
 Frame = -2

Query: 271 KVTNAVFTETHVENAMPFLESFSFLKTLLVSSNTSLSPNSHISLADASGTHFAMTCSRTR 92
           +V   +FTE   +     +++++ +K +L  + + LS NS +++  AS TH    C R+ 
Sbjct: 414 EVVVVIFTEGRRDTFRFAIDTWASVKEVLELTLSCLS-NSDVNIEHASTTHVLKICGRSE 472

Query: 91  F 89
           +
Sbjct: 473 Y 473


>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
          Length = 518

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
 Frame = +3

Query: 9   MADEKEVEKTIAE---DLVVTKYKLAGQIVNRVLEQVIAKC-VPDASAREICEFGDKLVL 176
           M  + E  K +AE   DL +  +K+      R+L+ + A C VP+   R IC   DKL  
Sbjct: 208 MIPDAECVKIVAEILADLELGDFKIKVNH-RRLLDGMFAVCGVPEGKFRTICSAVDKLD- 265

Query: 177 EETNKVFKKEKDSKKGI 227
           + T +  +KE   +KG+
Sbjct: 266 KATWEEVRKEMVDEKGL 282


>SB_1121| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 219

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -1

Query: 488 HSSQYQASGDEEPLH*HDELPTKHLQHVQRLHFH 387
           H S    +    PLH HD +PT    H+ RLH H
Sbjct: 79  HDSIRTPTTPYSPLHTHDSIPTPTYPHL-RLHTH 111


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 244 THVENAMPFLESFSFLKTLLVSSNTSLSP 158
           TH ++ + F E+F+FL++L ++  T   P
Sbjct: 147 THQDDILAFRENFAFLRSLYLTDGTDTPP 175


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,491,919
Number of Sequences: 59808
Number of extensions: 474488
Number of successful extensions: 1585
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1569
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)