Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0720
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 37 0.003
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.18
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 31 0.23
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 28 1.2
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.2
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||... 27 2.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 2.9
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 27 2.9
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 3.8
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 26 5.0
SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr... 26 5.0
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz... 26 6.6
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 26 6.6
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 6.6
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 6.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 26 6.6
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 6.6
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 26 6.6
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 8.8
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 8.8
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 37.1 bits (82), Expect = 0.003
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Frame = +1
Query: 253 NYFKMMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEML-SVISKNTDLKK 429
N +++ S+K + QL+ E++ NT+E D+ ++E EE++ S+ + T+L++
Sbjct: 593 NLYEITFLSMKQKM---QLKSLREEIDNTKEALDLSVKERSIQEEKLNESLKTSKTNLEE 649
Query: 430 QLSQLFIEHSEALEINQKLQD 492
Q H E L+ QKL D
Sbjct: 650 QTQLAEKYHEELLDNQQKLYD 670
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 31.1 bits (67), Expect = 0.18
Identities = 22/81 (27%), Positives = 42/81 (51%)
Frame = +1
Query: 271 TRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFI 450
T SIK+ ++++ LR + LK++R + Q EEEM+ + N + QL+
Sbjct: 340 TLSIKNEKLEKLLRNTIGSLKDSRTS-------NSQLEEEMVELKESNRTIHSQLTDAES 392
Query: 451 EHSEALEINQKLQDTINTFFN 513
+ S + N+ L+ +I+ + N
Sbjct: 393 KLSSFEQENKSLKGSIDEYQN 413
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +1
Query: 301 EQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQ 480
E L + + N + + D L ++E+ E+ + + I D + SQL E E E N+
Sbjct: 322 EDLSTRISEFDNLKSERDTLSIKNEKLEKLLRNTIGSLKDSRTSNSQLEEEMVELKESNR 381
Query: 481 KLQDTINTFFNAVMNFVIH*KSL 549
+ + + + +F KSL
Sbjct: 382 TIHSQLTDAESKLSSFEQENKSL 404
Score = 25.8 bits (54), Expect = 6.6
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +1
Query: 259 FKMMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLS 438
FK + S ++++ + +QLK+T K L E E++ ++ +N DL+ +L
Sbjct: 611 FKKLNES--HQELENNHQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRTKLL 668
Query: 439 QL 444
+L
Sbjct: 669 KL 670
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 301 EQLRIALEQ-LKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQL 444
E L I+LE+ L N R+K LL + E + KN+ L +++ +
Sbjct: 1417 ESLIISLEESLSNQRQKESSLLDAKNELEHMLDDTSRKNSSLMEKIESI 1465
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 30.7 bits (66), Expect = 0.23
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 331 KNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEA 465
K TR+ Y+ Q++ + EE++ +++K LKK + L E SEA
Sbjct: 425 KKTRQSYE---QQTVKIEEQLKFLLNKEKKLKKSIEALSFEKSEA 466
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = -2
Query: 495 RILQLLIDLKSFTVFNEELRQLFFKVS 415
RILQL DLKS NE R L K+S
Sbjct: 873 RILQLKSDLKSIRNNNERKRNLQNKIS 899
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 283 KSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKK 429
K +++ EQ R Q ++ D+L + + ++E + KNTD+KK
Sbjct: 372 KLKELHEQNRRLQRQKSLATQEIDLLRENLKSYDDEEAILSEKNTDMKK 420
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/56 (28%), Positives = 30/56 (53%)
Frame = +1
Query: 319 LEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQKL 486
LEQLK T + D L +E+E+N++ + K ++L K + + + +N +L
Sbjct: 651 LEQLKMTEAEVDSLRKENEENKQ---VIALKESELVKSNDNKLLLNEQIESLNDQL 703
>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.2
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +1
Query: 322 EQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQKLQD 492
+QL+ ++ D+LLQE E E + D+ + S++ + S +KL D
Sbjct: 215 QQLQELEQENDVLLQEFEHTMERLRDTGKSLADITRLQSEISAQLSIQSSAAEKLYD 271
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/51 (23%), Positives = 26/51 (50%)
Frame = +1
Query: 292 QVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQL 444
Q +E++ ++ ++L E +QN+E+ +++ L+ Q SQL
Sbjct: 262 QREERIERIKAEITELNHSLELLRVEKQQNDEDYTNIMKSKVALELQSSQL 312
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.1 bits (57), Expect = 2.9
Identities = 15/72 (20%), Positives = 33/72 (45%)
Frame = +1
Query: 274 RSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIE 453
R + ++QLR + ++L + E+YD+L E + E E+ + + + +
Sbjct: 55 RIVTEVNYEQQLRNSEKKLLQSNERYDLLEDERKLLENELSQIKEYLREKSSSYDTVLHD 114
Query: 454 HSEALEINQKLQ 489
S +N+ L+
Sbjct: 115 CSSLKSVNEALK 126
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 600 RSELCKLKEQQPQSLYSELVQSEPSLVAVDTALN 701
R +LCK +Q+P+S+Y + E + + A+N
Sbjct: 138 RIQLCKETKQEPRSVYGRIQALEDASLISKVAIN 171
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 5.0
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +1
Query: 355 ILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEALEINQKLQDTINTFFN 513
+L + E+ +E+ + V+ D ++L +E +L + KLQ + T FN
Sbjct: 154 VLSYDIEKLDEKTVLVLEDVEDCDRRLLSSLVEALSSLVRHSKLQGCLYTIFN 206
>SPBC19C2.10 |||BAR adaptor protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 501
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/76 (23%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +1
Query: 265 MMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQL 444
+ T+ K+++ + +L E L+N R KY+ L+E E ++ + + +L Q+
Sbjct: 153 LSTKIQKAKKEESKLE---EDLRNARAKYEESLEEFEDRMVQLKELEPDRVENVVRLLQM 209
Query: 445 FIE-HSEALEINQKLQ 489
I H ++L++ + L+
Sbjct: 210 QIRFHQKSLDLLKGLE 225
>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = +1
Query: 373 EQNEEEMLSVISKNTDLKKQLSQLF--IEHSEALEINQKLQDTINTF 507
+ EEE S++++N D+K + + I +S E++ +L+ I F
Sbjct: 7 DSEEEEQTSLVNENNDIKGRSEEPHWKIPNSPKAEVDTELEKKIKQF 53
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 277 SIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEH 456
++K+R + + L+ +N Y LQE E + S + ++ KQ+ +++ +H
Sbjct: 495 AMKARDILMTEKKTLKLAENKEHDYIGKLQEREHALTKYESSLKAELEVYKQIKEIYGKH 554
Query: 457 S-EALEINQKLQ 489
S E L ++ LQ
Sbjct: 555 SVEVLTEDKHLQ 566
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 6.6
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +1
Query: 283 KSRQVDE---QLRIALEQLKNTREKYDILLQESEQNEE----EMLSVISKNTDLKKQLSQ 441
K + +DE +L A + L + + I E+EQ E + L+ ++ D+KK+L +
Sbjct: 75 KEKPLDEKVKELENANKTLSDLVRRIQIQRDEAEQKAEIYNRDALNTKQEHLDIKKRLEK 134
Query: 442 LFIEHSEALEINQKLQDTINTFFNAVM 522
+ E N+ LQD + N ++
Sbjct: 135 SDETVCKLKEENENLQDMLRNVGNELV 161
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 6.6
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 286 SRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISKNTDLKKQLSQLFIEHSEA 465
+ ++ + LR AL++ K YD L +EE ++ S+ +L KQ+++ + E
Sbjct: 151 TEEMSKTLR-ALKEEKKMYFNYDNFLSSQTVHEENTAALDSEIDELMKQINEKEEKIEEI 209
Query: 466 LEINQKLQ 489
+ KLQ
Sbjct: 210 SDETDKLQ 217
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 25.8 bits (54), Expect = 6.6
Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 YFKMMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVISK-NTDLKKQ 432
YF ++ +EQL L QL+N + + + LQE E +LS + + L+K+
Sbjct: 619 YFSENVEMDLVKRKEEQLNAQLSQLENLQNE-ERKLQEKVNEHESLLSRTNDILSTLRKE 677
Query: 433 LSQLFIEHSEALEINQKLQ 489
+ I E ++ ++++
Sbjct: 678 RDEKLIPIHEWQQLQERIE 696
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 552 ELRHKLAEADDCISDLRSELCKLKEQQPQSLYSELVQSEP 671
+++ L+ + C+ DL S LC E +L E S+P
Sbjct: 570 DVKDDLSSSTSCVMDLLSSLCSFTE--VMNLMQETANSDP 607
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 25.8 bits (54), Expect = 6.6
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Frame = +1
Query: 274 RSIKSRQVDE-QLRIALEQLKNTREKYDILLQESEQNEEEMLS-------VISKNTDLKK 429
+S+K +Q D+ Q ++LKN E Y L +++E ++ +S + ++NT L K
Sbjct: 68 QSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLVK 127
Query: 430 QLSQLFIEHSEALEINQKL 486
L+ L +SE L++ +K+
Sbjct: 128 TLNSL---NSEFLQLLRKI 143
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.4 bits (53), Expect = 8.8
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Frame = +1
Query: 238 YIFYCNYF---KMMTRSIKSRQVDEQLRIALEQLKNTREKYDILLQESEQNEEEMLSVIS 408
Y+ Y +Y + ++ S D++ RI+ +L N RE +I Q ++Q+ E L +S
Sbjct: 577 YLLYPSYDLPDRNLSEHSYSSSSDDEQRIS--EL-NDRELDEIDWQAADQDVENALKDLS 633
Query: 409 KNTDLKKQLSQLFIEHSEALEINQKLQ 489
+ D EALE+N ++
Sbjct: 634 DDNDFDTGSISASQSQPEALEVNTPIK 660
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 319 LEQLKNTREKYDILLQESEQNEEEMLSV 402
LE L+N E + + E+ EEE++S+
Sbjct: 519 LESLRNNTEWISSVAENGEKTEEELISI 546
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,550,520
Number of Sequences: 5004
Number of extensions: 45768
Number of successful extensions: 186
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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