Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0719
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    27   2.4  
SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces pomb...    27   3.1  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    26   7.2  
SPCC11E10.07c |||translation initiation factor eIF2B alpha subun...    26   7.2  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    25   9.5  

>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = -1

Query: 552 LYAAFEILF*LCSSICVRSLA 490
           +Y AF +LF LC++I VR +A
Sbjct: 182 IYTAFALLFVLCAAIMVRDVA 202


>SPBC1289.15 ||SPBC8E4.07c|glycoprotein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1283

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 540 MLHTNTMLSY*DYYGPPNNLNSTAITVTS 626
           ++HTNT +S       P N N+T +++T+
Sbjct: 95  LIHTNTSISKPSQTATPQNTNTTQVSLTN 123


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 579 SNPNKTALYLYAAFEILF*LCS 514
           SNPNK ++Y+Y  F     LCS
Sbjct: 72  SNPNKFSIYIYIYFFFYSFLCS 93


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 14/46 (30%), Positives = 27/46 (58%)
 Frame = -1

Query: 609 RWNSDY*ADHSNPNKTALYLYAAFEILF*LCSSICVRSLASSLRED 472
           RW+ +  +   +PN+T L++ +A E+L         R++AS LR++
Sbjct: 773 RWDEE--SCSFDPNETNLFISSAVEVLRETLLDAANRAVASHLRQE 816


>SPCC11E10.07c |||translation initiation factor eIF2B alpha
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 261 RWCGRGLHNADSFTQTDRHLLFAGRCCLVRR*RC 362
           R+  R LH+   F Q  RHL+  G+  + R   C
Sbjct: 88  RFVTRSLHDVGDFEQCKRHLVENGKLFIQRARAC 121


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +1

Query: 286  MQTPSHKRIDIFYSLVGVALFVASGAII 369
            M TP  K  ++F+S V +   +A+GAII
Sbjct: 1612 MDTPRAKFTNVFFSDVLIPALLAAGAII 1639


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,185,846
Number of Sequences: 5004
Number of extensions: 65011
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)