Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0719
         (798 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0873 + 20455860-20456042,20456864-20457102,20457596-204576...    30   2.5  
03_06_0067 + 31430669-31430852,31430954-31431099,31431227-314316...    29   5.7  
09_04_0224 - 15842318-15843259                                         28   7.5  
02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    28   7.5  
06_01_0883 + 6768998-6769381,6769518-6769616,6769664-6769726,677...    28   9.9  

>04_03_0873 +
           20455860-20456042,20456864-20457102,20457596-20457692,
           20457816-20457857,20458060-20458186,20458879-20458991,
           20459063-20459126,20459218-20459311,20459393-20459501,
           20459803-20459859,20460064-20460126,20460158-20460195,
           20460835-20461028,20461266-20461477
          Length = 543

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +3

Query: 159 HLRVRAWLSTTTVT---MQMRISACSS--PVPLSGTSHIRWCGRGLHN 287
           HL   AW     +T   + M   ACS+  PV + GT H RW     HN
Sbjct: 293 HLGHLAWADAFVITADSISMLSEACSTGKPVYVVGTEHCRWKFSDFHN 340


>03_06_0067 +
           31430669-31430852,31430954-31431099,31431227-31431614,
           31431707-31431783,31431922-31432146
          Length = 339

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 482 NEEAKLRTQ-IELHNQKRISNAAYKYNAVLLGLLWSA 589
           N+E K   Q   LHN+K    A+  ++ VL+G LW++
Sbjct: 257 NDEVKSHLQKYRLHNRKSPGTASASHSIVLVGDLWAS 293


>09_04_0224 - 15842318-15843259
          Length = 313

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 202 CRCGYRHAR-HRYLCRVPHIFAGAAAGYIMQT 294
           C     H + H YL  VP +FA +   Y+M+T
Sbjct: 142 CEENMNHGKTHAYLSSVPRLFASSPYDYVMKT 173


>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 19/68 (27%), Positives = 26/68 (38%)
 Frame = +3

Query: 150 WSWHLRVRAWLSTTTVTMQMRISACSSPVPLSGTSHIRWCGRGLHNADSFTQTDRHLLFA 329
           W+W   +   L T   T     S  +SP        +R C R   NA      + H +F 
Sbjct: 166 WTWLESMATGLGTNPYTG----SIDASPEWWEAMEGMRKCARSFRNAPLRFIAEHHAVFR 221

Query: 330 GRCCLVRR 353
           GRC +  R
Sbjct: 222 GRCVVGNR 229


>06_01_0883 +
           6768998-6769381,6769518-6769616,6769664-6769726,
           6770883-6770931,6771338-6771405,6771463-6771715,
           6772244-6772380,6772708-6772821,6773059-6773258,
           6773367-6773561,6773650-6773812
          Length = 574

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 214 YRHARHRYLCRVPHIF--AGAAAGYIMQTPSHKRIDIFYSLVGVALFVA 354
           YRH +HR+ C   ++F   GA   +  + P   +  + YS   V   VA
Sbjct: 363 YRHQQHRWTCGAANLFRKVGAEILFTKEVPFWWKFYLLYSFFFVRKVVA 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,705,414
Number of Sequences: 37544
Number of extensions: 427857
Number of successful extensions: 942
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)